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SGN Marker TG652

SGN-M78

SynonymsNone
Locus associationsNone
RFLP details 
Insert size
2600
Vector
pUC
Cutting Site
PST1
Drug Resistance
AMP
Image
TG652 image not available
Forward sequence
AGGAGGATTCTGATGATTATAATTATACACTGTAAACACAGAAGCAGCTAGCTCAGATATGGAAGATAGAAATTTAAGGACTTGGAAAGT
TCATAGGCATCTGGCGGGGATCTGATAAGGAAGGGCAGAGGAATCAGTGACGCTACTAAGAATAGATGGCCAAACAATTGAACCAAAAAC
AAGGAGAAGTGATTAACAGGAGCAGGAATTAAAAAGGTTGAAGTGGAAAATCAGCAATGATGGGAAATAGGTGAATGGAAAATAAAAAAA
CAGTGAATTAAATCGTACAGAGAATATAGGCTTCCTATTGCTTCTACTGAAAAAAATTAAAGGTGAAATTTACTTCATTTGGCTGCATTC
TTCTTAAATAATATAATCTACTTCCTTAACTGAAGAACACAACCCACTTGCAAGAATATCAGTACCTGAAGTTTGTTCTGTTCTCCAAAT
ACATTTATAGAAGCACGTTGTAAATGAAGACAGAGAACCTGCAAGGTGGCACAACAGTAAGCACATGCAAAAGAGTCAACAAATAAAACA
CATGAAAAAACCATTAAATCACAGAGCGCTGAAGCATCAAGTATTAAAATTAAATCCTATTTGCCCCAAGTGACATGTAAAATGTTACTC
CTTGACGATCCCTTATTTTCCTCGTTTTATAATTTTGTTGGCAGCTATATGGT
Reverse sequence
TGTACTGTGCGACATGGAAGAACTGTTCTAAGTCCAAGGAGATTGATGCATGCCATGACTTCTCACATTCCTGGTTTCAATCTAACTAGC
CAGCAGGTATTCTTTTCTTCACAGTATGCGGACAATTATCACTAGTACTAGTGTTTTAACTTACATATTTCCCAAATGTAGGATGCAGAG
GAAGCACTCTCCCATCTTTTATCTTCTTTAAGAGCCGAACTGTCAGAATCTTTTGTTCATGATCACAGCTCTTTGGCGGATGTAATTACA
CTTCCTAATTCTAGGATTGTTACACAAAGGATGAAAGGAGAAAGTGAACAGGAGAGATGGAGGCAGAGTTTTCTTGGGCCTTTTGATGGG
ATTCTTGGTAGTTTTTTAAACTGCCAAACTTGTTCGTTTCAGGTTGAATGGTACTTGAAAGAACATTTAATATCATACAATTTAATTATT
GCCTGCTGTATCTTTTTGCACATTATAGAACTTGTTTGCTAAATTTACAAAGAATATTCTAGAGTTGCTTTGCTGTGCTAGCCCAGGCGC
TCATGCAATCTGTGATATTGATTTCAAGTTGCTGTAAAAGGGAACAAACTGTTACCTAATGGATAATTTTTTAAAGAAAAATAATTAACT
AACTGGTGTCTATTGTACATTGAAAGTGAGAAAAGGTCAAAACATCAAAAGATTCAAAAGTCTTTTTACTTTCTTAAACTTTGTGCCAAG
TCAAAAC
RFLP sequence matches to unigenes 
Unigenee valueMatch length (bp)Strand
SGN-U1699704.2e-3066 (9.7% of RFLP seq)+
Mapped locations  
Map: Potato meta-QTL consensus map   
Map version
107 (location: 53374)
Chromosome
4
Position
38.35 cM
Confidence
uncalculated
Protocol
unknown

MQTL_1_Maturity_4 MQTL_1_Late_blight_5.2 MQTL_2_Late_blight_4
Potato meta-QTL consensus map

Map: Tomato-EXPEN 1992   
Map version
28 (location: 7985)
Chromosome
4
Position
44.70 cM
Confidence
F(LOD3)
Protocol
RFLP


Tomato-EXPEN 1992

Map: Potato-TXB 1992   
Map version
27 (location: 7986)
Chromosome
4
Position
16.60 cM
Confidence
I(LOD2)
Protocol
RFLP


Potato-TXB 1992
Overgo hybridization and physical mapping 
TG652 was used as an overgo probe on plate 9 [well E11]

Plausible BAC Matches:   None

 Non-Plausible BAC matches

P200L18,   P195L02,   P163D24,   P201C05,   P284L23,   P195C19,   P020F17,   P065D22,   P317M05,   P074K04,   P287K13,   P109O19,   P306B06

 Overgo Sequences

A sequence
CTGATAAGGAAGGGCAGAGGAATC
B sequence
TCTTAGTAGCGTCACTGATTCCTC
AB sequence
CTGATAAGGAAGGGCAGAGGAATCAGTGAC
Marker sequence
AGGAGGATTCTGATGATTATAATTATACACTGTAAACACAGAAGCAGCTA
GCTCAGATATGGAAGATAGAAATTTAAGGACTTGGAAAGTTCATAGGCAT
CTGGCGGGGATCTGATAAGGAAGGGCAGAGGAATCAGTGACGCTACTAAG
AATAGATGGCCAAACAATTGAACCAAAAACAAGGAGAAGTGATTAACAGG
AGCAGGAATTAAAAAGGTTGAAGTGGAAAATCAGCAATGATGGGAAATAG
GTGAATGGAAAATAAAAAAACAGTGAATTAAATCGTACAGAGAATATAGG
CTTCCTATTGCTTCTACTGAAAAAAATTAAAGGTGAAATTTACTTCATTT
GGCTGCATTCTTCTTAAATAATATAATCTACTTCCTTAACTGAAGAACAC
AACCCACTTGCAAGAATATCAGTACCTGAAGTTTGTTCTGTTCTCCAAAT
ACATTTATAGAAGCACGTTGTAAATGAAGACAGAGAACCTGCAAGGTGGC
ACAACAGTAAGCACATGCAAAAGAGTCAACAAATAAAACACATGAAAAAA
CCATTAAATCACAGAGCGCTGAAGCATCAAGTATTAAAATTAAATCCTAT
TTGCCCCAAGTGACATGTAAAATGTTACTCCTTGACGATCCCTTATTTTC
CTCGTTTTATAATTTTGTTGGCAGCTATATGGT
Related Markers  

Related Genotyped Markers: These markers have been genotyped and share a name with this marker
Genomic location of TG652  
 %2Fsearch%2Fmarkers%2Fmarkerinfo.pl%3Fmarker_id%3D78 marker 78
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