SGN Marker C2_At3g45900

SGN-M7927
COSII markers are Conserved Ortholog Set II - orthologs between many asterid species

SynonymsNone
Locus associationsNone
Orthologs in this COSII group 
SpeciesCopiesSequence IDCDS/Edited sequencePeptide sequencePredicted introns
CoffeeSingle311036 (SGN)
125799 (CGN)
---
Capsicum annuumSingleSGN-U199529---
Solanum tuberosumSingleSGN-U254726---
ArabidopsisSingleAt3g45900 on TAIR---
Mapped locations  
Map: Pepper-COSII   
Map version
58 (location: 41435)
Chromosome
1
Position
73.10 cM
Confidence
I(LOD2)
Protocol
dCAPS


Pepper-COSII

PCR data   Exp. ID 43411
Forward primer (5'-3')
GAATCAACAGGAGTCTCCTCCAAACT
Accessions and product sizes
Approximate temperature
55°C
Reverse primer (5'-3')
TATTAGCAGCATGCTTATGCTTGGTG
Digested band sizes (using unknown enzyme)
Mg+2 concentration
Unknown
   Enzymes
  

Map: Tomato-EXPEN 2000   
Map version
52 (location: 38531)
Chromosome
8
Position
45.00 cM
Confidence
I
Protocol
CAPS


Tomato-EXPEN 2000

PCR data   Exp. ID 39750
Forward primer (5'-3')
AGTTCTGCTTCTAAGTTTTGGGCTG
Accessions and product sizes
Solanum pennellii TA56
300
Solanum lycopersicum TA209
300
Approximate temperature
55°C
Reverse primer (5'-3')
ACTTTAGTTTGGAGGAGACTCCTGTTG
Digested band sizes (using amplicon difference)
Solanum lycopersicum TA209
300
Solanum pennellii TA56
175
Mg+2 concentration
1.5mM
   Enzymes
  

Map: Arabidopsis COSII   
Map version
44 (location: 26361)
Chromosome
3
Position
16.89 MB
Confidence
uncalculated
Protocol
CAPS


Arabidopsis COSII
Universal primers for Asterid species 
No additional PCR data found.
Genomic location of C2_At3g45900  
%2Fsearch%2Fmarkers%2Fmarkerinfo.pl%3Fmarker_id%3D7927 marker 7927
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