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Unigene SGN-U204644

Unigene Basic Information

Unigene ID:	SGN-U204644
Unigene Build:	Capsicum annuum #1
Date:	2003-12-15
Organism:	C.annuum
Alternative ID:	204644
mRNA sequence:	Length: 426 bp

>SGN-U204644 Capsicum annuum #1 (1 members)
GTTGCTAGCTGTAATTTTTCATTCTTGATTTGGAAATTGGGAGAAAGATTCCTTTTTTTATTTGTGAAATCTTGAAAGTTGTTGAATTTG
GTATCTTTGTTCTGGTAATGCTAATTGAAGATTTGGGTAATGGCTACTTTGGTACCTGGTGTTCTATTGAAGCTACTTCAGCATATGAAC
ACAGATGTGAAAGTTGCTGGTGAGCACAGGTCATCTTTGTTGCAAGTGGTTAGCATTGTGCCAGCATTAGCAGGTGGGGAGCTTTTCCCT
AACCAAGGGTTCTACTTAAAGGTATCAGATTCTTCTCATGCCACTTATGTATCTTTGCCTGATGAACATGATGATCTTATTCTTAGTGAT
AAGATTCAACTGGGTCAGTTTATTCATGTTGAGAGGCTTGAAGCTGCCTCACCTGTGCCTATACTT

[Blast] [AA Translation]

Associated Loci (0)

None

Genomic locations (0)

None

Library representation (1)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Capsicum annuum	KS10	Hairy root	2179	1

mRNA member sequences (1)

To view details for a particular member sequence, click the SGN-E# identifier.
[Hide Image]

Markers Information (1)

Unigene Mapped Marker Information

No member sequence or clone is mapped.

COSII Markers Information

COSII marker C2_At1g08760 was created with this unigene.

Expression Data (0)

No expression data was found associated to this unigene

Annotations (manual: 0 | blast: 2 | go: 0 )

Manual annotations

None manual annotation was found for this unigene

Blast Annotations [Show All]

Database	Program	Best Match	Score	E-value	Identity	Alignment Length	Frame
genbank	blastx	gi\|15223907\|ref\|NP_172353.1\|	186.8	5e-47	91.92	297 bp (69.7%)	1
Description:	unknown protein [Arabidopsis thaliana] >gi9802564\|gb\|AAF99766.1\|AC003981_16 F22O13.25 [Arabidop…
arabidopsis	blastx	At1g08760.1	186.8	3.2e-48	91.92	297 bp (69.7%)	1
Description:	At1g08760.1 68408.m00877 expressed protein similar to At1g21030, At5g44890, At2g29240, At1g0874…
swissprot	blastx	No significant hits ( or none blast was used over this dataset )

GO Terms Annotations

No Gene Ontology annotation

Protein prediction analysis (2)

Prediction based on ESTScan [ Show ESTScan Detail]

>SGN-P39043 (99 Aa)

MATLVPGVLLKLLQHMNTDVKVAGEHRSSLLQVVSIVPALAGGELFPNQGFYLKVSDSSHATYVSLPDEHDDLILSDKIQLGQFIHVERL
EAASPVPIL

SignalP predicts non-secretion with a score of 0.38

No InterPro domain matches or not analyzed.

Prediction based on longest six frame method

>SGN-P158776 (104 Aa)

LKIWVMATLVPGVLLKLLQHMNTDVKVAGEHRSSLLQVVSIVPALAGGELFPNQGFYLKVSDSSHATYVSLPDEHDDLILSDKIQLGQFI
HVERLEAASPVPIL

SignalP predicts secretion with a score of 0.789

No InterPro domain matches or not analyzed.

Gene Family (6)

Family Build (I value*)	Family ID	Annotation**	# Members
1.2	786	Znf_Tim10/DDP Prion	24
2	23014	Znf_Tim10/DDP Prion	17
5	61369	Na_decarbox_g	4
1.1	102082	Protein of unknown function DUF936 plant	22
2	119153	Protein of unknown function DUF936 plant	19
5	130563	Protein of unknown function DUF936 plant Nucleic acid-binding OB-fold - Molecular Function: nucleic acid binding (GO:0003676)	9

*i value: controls inflation, a process to dissipate family clusters. At high i value, genes tend to be separated into different families.
**Annotation: the most common InterPro annotation(s) of the Arabidopsis members in the family.

Preceding Unigenes (0)

None

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