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Unigene SGN-U292070

Unigene Basic Information

Unigene ID:	SGN-U292070
Unigene Build:	Solanum tuberosum #4
Date:	2005-05-04
Organism:	S.tuberosum
Alternative ID:	292070
mRNA sequence:	Length: 402 bp

>SGN-U292070 Solanum tuberosum #4 (1 members)
GTTTGGTTCGAAGGCCGAGGAAGGGAAAGAAGGGAAAAATGGAGAGCCATCTATCGGTCCTGTTTATAGAAATCCAATAGCTAAAAATGG
TTTTCCATCAGCTGATCCTGATTTGTCTACAGCTTGGCAACTCTTCAGATCAGCTGTTGAAAAATATCCAAGAAACAGAATGCTGGGATG
GCGTGATTTTAAGGATGGAAAGTGGGGTCCTTATAATTGGAAAACCTACAAAGAAGCTTATGAAGAGACTTTGCAGACTGGTTCTGCATT
ACGGGCTCACAGAATTGAACCTGGCGCTCGAATTGGAATTTATGGAGCCAATTGTCCTCAGTGGATAGTAGCAATGGAGGCTTGCAGTGC
CCACAGCTTGATATGTGTTCCTCTCTATGATACCCTCGGATC

[Blast] [AA Translation]

Associated Loci (0)

None

Genomic locations (0)

None

Library representation (1)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Solanum tuberosum	cSTB	leaves and petioles 8 weeks old plants	10327	1

mRNA member sequences (1)

To view details for a particular member sequence, click the SGN-E# identifier.
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Markers Information (0)

Unigene Mapped Marker Information

No member sequence or clone is mapped.

COSII Markers Information

None cosii markers associated to this unigene.

Expression Data (0)

No expression data was found associated to this unigene

Annotations (manual: 0 | blast: 3 | go: 0 )

Manual annotations

None manual annotation was found for this unigene

Blast Annotations [Show All]

Database	Program	Best Match	Score	E-value	Identity	Alignment Length	Frame
genbank	blastx	gi\|255548375\|ref\|XP_002515244.1\|	193	5e-48	72.88	354 bp (88.1%)	3
Description:	long-chain-fatty-acid CoA ligase, putative [Ricinus communis] >gi223545724\|gb\|EEF47228.1\| long-…
arabidopsis	blastx	At2G47240.2	183	2e-47	67.8	354 bp (88.1%)	3
Description:	long-chain-fatty-acid-CoA ligase \| chr2:19400905-19404686 FORWARD
swissprot	blastx	P33124	65.9	7e-11	36.36	291 bp (72.4%)	3
Description:	Long-chain-fatty-acid--CoA ligase 6 OS=Rattus norvegicus GN=Acsl6 PE=1 SV=1

GO Terms Annotations

No Gene Ontology annotation

Protein prediction analysis (2)

Prediction based on longest six frame method

>SGN-P234244 (134 Aa)

FGSKAEEGKEGKNGEPSIGPVYRNPIAKNGFPSADPDLSTAWQLFRSAVEKYPRNRMLGWRDFKDGKWGPYNWKTYKEAYEETLQTGSAL
RAHRIEPGARIGIYGANCPQWIVAMEACSAHSLICVPLYDTLGS

SignalP predicts non-secretion with a score of 0.021

No InterPro domain matches or not analyzed.

Prediction based on ESTScan [ Show ESTScan Detail]

>SGN-P90372 (134 Aa)

FGSKAEEGKEGKNGEPSIGPVYRNPIAKNGFPSADPDLSTAWQLFRSAVEKYPRNRMLGWRDFKDGKWGPYNWKTYKEAYEETLQTGSAL
RAHRIEPGARIGIYGANCPQWIVAMEACSAHSLICVPLYDTLGS

SignalP predicts non-secretion with a score of 0.021

No InterPro domain matches or not analyzed.

Gene Family (6)

Family Build (I value*)	Family ID	Annotation**	# Members
1.2	51	AMP-bind	230
2	22134	AMP-bind	57
5	56529	AMP-bind	33
1.1	101420	AMP-dependent synthetase and ligase - Molecular Function: catalytic activity (GO:0003824) - Biological Process: metabolism (GO:0008152)	214
2	118584	AMP-dependent synthetase and ligase - Molecular Function: catalytic activity (GO:0003824) - Biological Process: metabolism (GO:0008152)	49
5	129530	AMP-dependent synthetase and ligase - Molecular Function: catalytic activity (GO:0003824) - Biological Process: metabolism (GO:0008152)	19

*i value: controls inflation, a process to dissipate family clusters. At high i value, genes tend to be separated into different families.
**Annotation: the most common InterPro annotation(s) of the Arabidopsis members in the family.

Preceding Unigenes (1)

Unigene	Build
SGN-U266938	Solanum tuberosum #3

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