Sol Genomics Network

Unigene SGN-U579266

Unigene Basic Information

Unigene ID:	SGN-U579266
Unigene Build:	Tomato 200607 #2
Date:	2009-03-25
Organism:	S.lycopersicum S.habrochaites S.pennellii S.pimpinellifolium S.peruvianum S.cheesmaniae S.lycopersicoides
Alternative ID:	none
mRNA sequence:	Length: 2869 bp

>SGN-U579266 Tomato 200607 #2 (55 members)
TCGAAAGGCGTTTCCAGCAGGTATATGTCGCTGAGCCTAGCGTTCCCGACACTATAAGTATCCTTCGAGGGTTGAAGGAGAAGTATGAAG
GCCACCATGGTGTCAAGATTCAGGATAGGGCTCTCGTTATTGCAGCCCAGCTTTCAGCTCGATACATTACAGGTCGACATCTGCCTGATA
AGGCTATTGACTTAGTTGATGAGGCTTGTGCAAATGTGAGGGTGCAACTTGATAGCCAGCCAGAAGAAATTGATAATCTTGAAAGGAAGA
GGATTCAGCTAGAAGTTGAACATCATGCTCTTGAAAAGGAAAAAGACAAGGCTAGCAAGGCTCGACTTGTTGAAGTGAGGAAAGAGCTCG
ATGACTTGAGGGACAAACTCCAACCTTTGATGATGAGGTATAAGAAAGAGAAGGAACGGGTTGATGAGCTTCGAAGGCTTAAGCAAAAGC
GCGATGAACTTACATATGCTTTACAAGAAGCTGAAAGGAGATATGATCTTGCTAGAGCAGCAGATCTTAGATACGGTGCCATCCAAGAAG
TAGAATCTGCAATAGCAAATCTTGAGAGTAGCACAGATGAGAGTACCAATGTTGACAGAGACTGTCGGACCCGATCAGATTGCGGAAGTA
GTTAGTCGCTGGACTGGAATTCCTGTCTCTAGGCTTGGCCAGAATGAGAAGGAGAAATTGATTGGTCTTGCTGATAGATTGCACCTAAGA
GTTGTCGGGCAAGATCAAGCTGTTAAAGCTGTTGCTGAGGCTGTGTTGAGGTCTAGAGCTGGATTAGGAAGGCCACAGCAACCAACTGGT
TCATTCCTTTTCTTGGGGCCAACTGGTGTTGGAAAGACTGAACTTGCTAAAGCTCTTGCTGAGCAGCTATTTGATGATGACAAATTGATG
GTCAGAATTGACATGTCCGAATACATGGAACAACATTCTGTTGCCCGGTTGATTGGTGCTCCACCAGGTTATGTTGGACATGAGGAAGGA
GGGCAACTTACGGAAGCTGTAAGGAGGCGCCCTTACAGTGTTGTGCTATTTGACGAAGTGGAAAAAGCTCACCCTGCAGTGTTTAATGCC
TTGCTTCAAGTGTTGGATGATGGAAGATTAACTGATGGTCAAGGTCGTACTGTTGATTTCACCAACACTGTGATCATTATGACCTCAAAT
TTGGGAGCAGAGTATCTCTTGTCAGGATTAAGTGGCAAGTGTACCATGGAGAAGGCCCGTGAAATGGTCATGCAGGAGGTGAGGAAGCAA
TTTAAGCCCGAGTTACTCAACAGGCTCGATGAGATTGTGGTGTTCGATCCTTTATCACACGAGCAGTTGAGGCAAGTCTGCCGTCACCAA
CTGAAAGATGTGGCAAGCCGTTTAGCTGAGAGGGGTATTGCTTTGGGTGTTACAGAGGCCGCCTTAGATGTCATACTTGCTCAGAGTTAT
GATCCGGTGTATGGTGCAAGGCCTATTAGGAGGTGGTTGGAGAAGAAAGTTGTAACGGAGTTATCAAAGATGCTTGTGAAGGAGGAGATT
GATGAGAATTCGACCGTGTACATAGATGCTGGACGTGGCGGAAAAGATCTAACATATAGGGTGGAGAATAATGGAGGGCTTGTGAATGCT
GCTACTGGTCAAAAATCTGATGTACTGATTCAGCTACCTAATGGGCCAAGGAATGATGCTGCTCAAGCAGTGAAGAAAATGAGGATTGAA
GAAATAGATGACGAAGATGATGAAATGGCAGATTAAAGAGAGGTTGAAAATAACACCATGAAAGTTGAAGATATATGAATTATTACTTTT
TGTTTAAAATACCCTGTATAGGGTTAGTCCAATTTTACATCATTAAGAAGTGAACGTTCACAAGTTCTCTGTTGATTTTGTTGTGTTGTT
TCTTTATGCAGCTTGAAAATGTCTAAATAGTAAATTGTATTTCTCTGATTTTCTGAAAAAAAAAAATCAAAGAGAAAAAATTAAGATTTT
TTTTTCAAAAAAAAAAAAAACATATGGGGAAAGCACGTATAATAGGAATTGGAATGGATTATTCAGCAACAAGCAAAATAGCTCTAAAAT
GGGCAATTGATAATTTAATTGAAGAAGGTGACACAATTATTATTATTCATGTTGTTTCTTCTAAAGTTGAACCAACTAGTAAACAACTCT
TTGAAGATACTGGATCACCTTTGATACCTTTGGATGAATTTAAACAGATTAATGTGTCTAAGTACTATGGATTAAATCCTGACAAAGAGG
TTATTGATATGCTTGAGCCTGTTGCCAAACTCAAAAAGGTGACAGTGGTGTCAAAGGTGTATTGGGGAGATGCAAGAGAGAAACTGTGTG
ATGCTGCTGAAAGTCTCAAACTTGATTCACTTGTAATTGGAGGCAGAGGCTTAGGAGTTCTTAAAAGGGTGTTACTTGGAAGTGTCAGTA
ACTATGTGGTGCAAAATGCAACATGTCCTGTTACTGTTGTGAAAACCAGTCCTCAAAAGTGAAAAAAAAAAAGACTATAAAGTTTACGTT
ATTTTCTTAATAAAAAAAAGAAGAAAAGCTATTTTGTGTTTTTACTTTCTTTCGTTTTTGTATAATGTCTTGTTTTGGATTTTATTTATT
TGATTTCTTAGGGTATGAGTTGGCTTTTGTTTGGGAGTGTTGGATGTGAGATGATTGTGGGACTTTGTTATATTTCAATTATATATTATA
TACATATTTTTGTTGGTTTCTTGTTTGTCATTTTTGAGACACTTGTCTTTGTCAAAATGTAAATGTTTCATTTGTGAGATTGGGAAGAAA
ACATTGTGAAGTTTCTTGTGATAAATATTACAATAGTTAAAATACCATACCAGTACAATTTTACGAGTGAGGTTTAACT

[Blast] [AA Translation]

Associated Loci (1)

Locus symbol	Locus name	Gene activity
tfhs1	Solanum lycopersicum heat shock protein

Genomic locations (0)

None

Library representation (20)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Solanum lycopersicum	FA	Fruit Mixture of Immature green, mature green, breaker, turning, and red ripe stages	13933	4
Solanum lycopersicum	FB	Fruit Mixture of Immature green, mature green, breaker, turning, and red ripe stages	6270	3
Solanum lycopersicum	LB	Leaf Mature leaves	3316	1
Solanum lycopersicum	LC	Leaf Mature leaves	5712	3
Solanum lycopersicum	LeCAD	Seedling Two-week-old seedings	428	1
Solanum lycopersicum	LeHRU	roots Three weeks old	312	5
Solanum lycopersicum	LeHSU	shoots Three weeks old	122	2
Solanum lycopersicum	LePU	Pericarp Turning stage of fruit ripening.	1542	1
Solanum lycopersicum	Sl_RootSSH04	root	171	1
Solanum lycopersicum	TUS	Rearrayed collection of L. esculentum cDNA clones	37722	5
Solanum lycopersicum	cLEC	combined undifferentiated and shooting callus 7-10 days post germination	14114	2
Solanum lycopersicum	cLED	ovary 5 days pre-anthesis to 5 days post-anthesis	9878	1
Solanum lycopersicum	cLEE	seeds and maturing carpels 5 days post-anthesis to fruit over-ripe stage	547	1
Solanum lycopersicum	cLEF	fruit pericarp mature green	5317	1
Solanum lycopersicum	cLEG	fruit pericarp breaker fruit	15207	15
Solanum lycopersicum	cLEM	fruit immature green fruit	4240	1
Solanum lycopersicum	cLEN	fruit pericarp red ripe to over-ripe	3979	4
Solanum lycopersicum	cTOD	flowers anthesis-stage flowers from full grown plants	5642	1
Solanum lycopersicum	cTOF	shoot developing shoots from 4-6wks old plants	9122	1
Solanum lycopersicum	vSlycmRNA		8362	2

mRNA member sequences (55)

Alignment image suppressed for unigene with 55 aligned sequences.
[Show Image]

Markers Information (0)

Expression Data (6)

Annotations (manual: 3 | blast: 3 | go: 0 )

Protein prediction analysis (2)

Gene Family (0)

None

Preceding Unigenes (2)

Unigene	Build
SGN-U314284	Tomato 200607 #1
SGN-U314288	Tomato 200607 #1

Accessions	Seedlots
Accessions		Breeding Program	Seedlot Name	Contents	Seedlot Location	Count	Weight(g)

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