Sol Genomics Network

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Unigene SGN-U568906

Unigene Basic Information

Unigene ID:	SGN-U568906
Unigene Build:	Tomato 200607 #2
Date:	2009-03-25
Organism:	S.lycopersicum S.habrochaites S.pennellii S.pimpinellifolium S.peruvianum S.cheesmaniae S.lycopersicoides
Alternative ID:	none
mRNA sequence:	Length: 1144 bp

>SGN-U568906 Tomato 200607 #2 (53 members)
GGGCAGCTCCGGCGAATTCATCCGCTTATCTGTCACCGTTCTCCGGTGAGGTTTACGAAGGTTTATAGCTCAAAGATGGGTGTTAAAGCA
AGGAAGAAAGCAATAACGAAGAAATTGAAAAAGGGAGCAAGCGATTTTTCTGCTTCTTCAGCTTCTAAAGATGAAGCCCGTGAGTTTCTG
CCATTAGAAGGTGGGCCAGCGCAGAAGCTTCCAAAGACTGAGGTGAGGGAAAATAAAGCAACAGTGTTATATATCGGGAGAATCCCGCAT
GGATTTTATGAGAATGAAATGGAAGGTTTTTTTAAGCAATTCGGTACAATCAAGAGGCTTAGAATTGCAAGGAATAAAAAGACTGGAAAA
TCAAAGCATTTTGGCTTCATAGAATTTGAGTCTCCTGAGGTTGCAAAAGTTGTTGCTGAAACTATGCATAACTATCTCTTGTTTGAGCAC
TTACTGCAAGTTCAGCTTATTCCTCCTGAACATGTACATCCAAGATTGTGGAAAGGTGTGAACCGCTGGTACAAACCCTTGGATTGGGTT
AAAATTGAAAGGAAGCGTCAGGACAAGGAAAGAACACTGGATGATCACAAGAAGTTGGTTGAAGGAATATTAAAACGTGACAAGAAGAGG
CGAAAGAGGATTGAAGCAGCTGGAATTGACTATGAGTGCCCAGAAATGGTGGGTTCAATTCAGGCTGCACCAAAGAAGATCAGATTTGAT
GCAGATTAGATCTTTCCGGCAGAACTGAGACAGCATGAAGATTAGTATTTGGTAGTTTGCATTTCAATTCATGGTCATGGCATTGGAACT
GTGCTACTGATGGGATGCTGTGTGCTGCTTAAATGTACTAAATTGTCAACGAAGGTGGAAAGATTGCTAGCACCATACACTTTTCTGATA
GAATTAGCATTATCATAGACGACACCGAGGCTGTAAGACATCCCAAACATCTACTTGTATTAGCTTTAATTTTTGTGACTCCGACTCGAA
ATGACTAGTGGAATTCTTTGGGTGATATAATGAATTCTGTCCAGGCTCTGGCTGGTAATGTATCTTAATTAATAGTGTTTGGACTTTGAT
GTGCCAGATCTGTGGTTTCTTTTGATCGTTATGTAACATTTCCTGCGGAAGGTACAGTTTAGCC

[Blast] [AA Translation]

Associated Loci (1)

Locus symbol	Locus name	Gene activity
Solyc06g074720	Solyc06g074720

Genomic locations (0)

None

Library representation (17)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Solanum lycopersicum	FA	Fruit Mixture of Immature green, mature green, breaker, turning, and red ripe stages	13933	17
Solanum lycopersicum	FC	Fruit Mixture of mature green, light green, breaker, turning, light red, and red ripe stages	8046	5
Solanum lycopersicum	Le2TR	roots 1-,2-,3-, and 4- month-old	1179	2
Solanum lycopersicum	LeMiToLf01	leaf	30679	1
Solanum lycopersicum	LePS	root 5 weeks old plants	823	1
Solanum lycopersicum	Sl_FruitQTL	late maturation (breaker and red ripe)	663	4
Solanum lycopersicum	Sl_RootInf01	root and collar Three weeks old	385	1
Solanum lycopersicum	TUS	Rearrayed collection of L. esculentum cDNA clones	37722	2
Solanum lycopersicum	cLEF	fruit pericarp mature green	5317	3
Solanum lycopersicum	cLEG	fruit pericarp breaker fruit	15207	2
Solanum lycopersicum	cLEN	fruit pericarp red ripe to over-ripe	3979	1
Solanum lycopersicum	cLES	leaf 4 weeks	5243	1
Solanum lycopersicum	cLEW	mixed roots grown under different nutrient and mineral difficiencies 4-8 weeks	3175	1
Solanum lycopersicum	cLEX	root fruit-set stage/post-fruit loading	3142	1
Solanum lycopersicum	cTOA	developing flower buds and flowers 0-3mm flower buds from full grown plants	6259	1
Solanum lycopersicum	cTOF	shoot developing shoots from 4-6wks old plants	9122	1
Solanum lycopersicum	vSlycmRNA		8362	9

mRNA member sequences (53)

Alignment image suppressed for unigene with 53 aligned sequences.
[Show Image]

Markers Information (0)

Expression Data (2)

Annotations (manual: 1 | blast: 3 | go: 2 )

Protein prediction analysis (2)

Gene Family (0)

None

Preceding Unigenes (2)

Unigene	Build
SGN-U315183	Tomato 200607 #1
SGN-U335019	Tomato 200607 #1

Accessions	Seedlots
Accessions		Breeding Program	Seedlot Name	Contents	Seedlot Location	Count	Weight(g)

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