Sol Genomics Network

This unigene is from an out-of-date build, Lycopersicon Combined #3
It has been superseded by SGN-U580753 in the current build, Tomato 200607 #2

Unigene SGN-U214628

Unigene Basic Information

Unigene ID:	SGN-U214628
Unigene Build:	Lycopersicon Combined #3
Date:	2004-06-30
Organism:	S.lycopersicum S.habrochaites S.pennellii
Alternative ID:	214628
mRNA sequence:	Length: 1235 bp

>SGN-U214628 Lycopersicon Combined #3 (33 members)
TCAATCCAATAGTGTCACAACCTCATATCAAACTACATTTCCATTTCTCCCTTTCTTCTAAACTTGACATCCCTCTTCCTTTTGTGGCTA
TTCTTGAAAAAAAAAATCTTTAATCTATGGCTACTCTCACAAATTTTTTGCTCAAACCCTCTCCAAATCTAGCTTCAATTACAAAAATTA
GCCCTTCACTTTACTCCAATTTCCCTTTTGAGAAATCCAAACAATCAATTTTCAAGAACCTCAAAACAAACAAGCCCTTATTGATTACAA
AGGCAACAGCAGCACCTGATGTTGAGAAAAAAGTGGCTAAAAGTGAAAGAGTACAAAAGGTTAATAGTATGGAGGAATTGGATGAAGCAT
TAAAAAATGCGAAAAATCGACTAGTTGTGGTTGAATTTGCAGGCAAAGATAGTGAACGTTCGAAAAATATTTATCCTTTTATGGTGAATT
TAAGTAAGACATGTAACGATGTCGATTTCTTGTTGGTGATCGGAGATGAAACGGAGAAGACTAAGGCACTCTGCCGGAGAGAAAAGATTG
ACAAGGTACCACATTTCAACTTCTACAAAAGCATGGAGAAGATCCACGAGGAAGAAGGCATTGGCCCGGACCAACTTGCCGGTGATGTAC
TCTACTACGGTGACAGCCACTCCGAAGTAGTGCAGCTCCACAGCAGAGAAGACGTTGAAAAGGTAATCCAAGACCACAAAATCGATAAAA
AATTAATAGTCCTCGACGTTGGATTGAAGCATTGTGGACCATGTGTGAAAGTTTATCCAACAGTGATTAAGCTATCGAAACAGATGGCTG
ATACAGTCGTGTTCGCGAGAATGAATGGTGATGAGAATGATAGTTGTATGCAGTTTTTGAAAGACATGGATGTTATTGAAGTGCCTACGT
TTTTGTTTATAAGAGATGGTGAAATTTGTGGAAGGTATGTTGGTTCTGGGAAAGGTGAACTTATTGGAGAAATTCTTAGATATCAAGGAG
TTAGGGTTACTTATTAATATTGTTGAAGTCATATTATATACTTAATTGGGACATTTGATTTTGTGTTAAATGATTATGGACTAGTTAAGT
GGGGAAAAAACCAAGTTGACTTGGTTGAGATTTAAGTTTTGGTATGTTTAGTTTGTAAAACTATGTTGTAAGTGATCAAAGATTGTCATG
ATAATTGATTTTGAATGAGAATGTTATTAGCCTTGATTTAGTTGAAAAAAAAAAAAAAAAAAAAA

[Blast] [AA Translation]

Associated Loci (0)

None

Genomic locations (0)

None

Library representation (14)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Solanum lycopersicum	TUS	Rearrayed collection of L. esculentum cDNA clones	37722	2
Solanum lycopersicum	cLEC	combined undifferentiated and shooting callus 7-10 days post germination	14114	1
Solanum lycopersicum	cLED	ovary 5 days pre-anthesis to 5 days post-anthesis	9878	2
Solanum lycopersicum	cLEF	fruit pericarp mature green	5317	2
Solanum lycopersicum	cLEG	fruit pericarp breaker fruit	15207	2
Solanum lycopersicum	cLEI	whole seedlings germinating seed	3927	1
Solanum lycopersicum	cLEL	developing flower buds and flowers anthesis-stage flowers from full grown plants, 4-8 weeks old	11276	5
Solanum lycopersicum	cLER	leaf 4 weeks	5127	1
Solanum lycopersicum	cLES	leaf 4 weeks	5243	2
Solanum lycopersicum	cLET	leaf 4-6 weeks	9135	5
Solanum lycopersicum	cTOB	developing flower buds and flowers 3-8mm flower buds from full grown plants	5524	4
Solanum lycopersicum	cTOF	shoot developing shoots from 4-6wks old plants	9122	4
Solanum lycopersicum	cTSC	seed	2256	1
Solanum habrochaites	cLHT	leaf trichomes 4-8 weeks old	2457	1

mRNA member sequences (33)

Alignment image suppressed for unigene with 33 aligned sequences.
[Show Image]

Markers Information (1)

Expression Data (2)

Annotations (manual: 2 | blast: 2 | go: 4 )

Protein prediction analysis (1)

Gene Family (3)

Family Build (I value*)	Family ID	Annotation**	# Members
1.2	39	Thiored Thioredox_dom2	262
2	24743	Thioredoxin Thiored Thioredox_dom2	7
5	58771	Thioredoxin Thiored Thioredox_dom2	7

Preceding Unigenes (1)

Unigene	Build
SGN-U145060	Lycopersicon Combined #2

Accessions	Seedlots
Accessions		Breeding Program	Seedlot Name	Contents	Seedlot Location	Count	Weight(g)

Attribute	Value
Project Name:
Start Date:
End Date:
Event Type:
Event Description:
Event Web URL: