Sol Genomics Network

Unigene SGN-U268156

Unigene Basic Information

Unigene ID:	SGN-U268156
Unigene Build:	Solanum tuberosum #4
Date:	2005-05-04
Organism:	S.tuberosum
Alternative ID:	268156
mRNA sequence:	Length: 1446 bp

>SGN-U268156 Solanum tuberosum #4 (9 members)
AAAAAGCTGTAAAACTTATTGTGCCCAGATCTTTGGCAGAATAGATCTTTATATTAATACTCGCCTTGCTGGTTTTCTTATATTTGTCTC
ATTGTCATTTTTTGTTAAGTTTCCCTTGAGTTTTCTCTGGATTATTGCTTGTTCTTGATATACCATGTACCATAACAAATGTTCACACAC
TATTAATCTTTGAGAAGGATATCTCAACCTGGTAAGTGGTAACACATATGTGACTAGCCAGTGCCTTTTGGTATATGTTGATTACCATTC
ACTTCGTAGAAAGGGGCTGTATTTTTAATGTTCTAGCCTATTAAACATTAAGCACCATTTCATTTGAAATAAGTAAGTATATGTGTTTTT
CTAGGTTGGATATTATGGTTAGTGTTGTTAAGGTTCTACAATGAGTATCTTAACTTAAACCCATAGTCCATTCTATTTTTTGATCTTTTA
TTCTAAAATCTAACTTGTTACATTTACAGCGACAATCAGTGTCTCTTAATCATGTCCATGAGATGCTGTCAAGTAACGTATTCGAAATTC
AGCTAAGGAAGTCATCTTCGAGTAGCTCAAATACCACGACTACAACTTTGTCCATTCTTTCCTACATGGAAAAACAACATACTCCACAGA
ACGCTACTGATAGGACTCTAAAAAGATAAAGCCTTTGGAAATAAGTGAGGTAGAAGTGATGGCAACAACTGCTGCAGCTGCTCCTTCAAA
TGCACTGGAAAAATTTGAACCACCCACACCAACCAAAAAGGTGTAACAGGAACTCCCACACACCATTTTGTCACTTCTCCTTATGCTAGG
GACATTATAATGAATGACTCTCCCTATGCTCTGGTTTTTTGCATCAGGAAGATTAGCTATGGCCAAGCAAACTGCAGTGTCCTCTAAATA
TAATAGACAATGACATGCTAATCTTATATACCAAAACTGCAACATGTACTATATTATTTTGGTTATATTACATTAGTTAGTATGTCTATT
GTACATATTCTGAATATTTCTAATAGTACATAATATAATAGATCGTATTATCTATCTTCAAAAAAAAAAAAAAAAAAACTCAGACTAGTT
CGGCATCAAAGTAAAGATCATGCTTGACTGGGATCCTAAGGGTAAACAAGGGCCTATGACCCCATTGCCAGATTTGGTGACTATTCATCC
ACCCAAGGAGGAAGAAGAGTTTGTTATTCCTCCTCCTATGATAGCTGCTCCCGCAATCGAGGTTCTTCCTGTGGCATAACCTGTGTTATG
ATGTTATCTTTGGTCTTGAGAACTACTGCGCTAGCTGGCTTGTACTTTTTATTTATTTTCTTTTTTGACTGCTGAATACTAGGTTACATA
GTGAACCATTCTGCTCTAGTTTTTGGAAAAAGTTTTGTTGAACATTTTTTTCAAGTAAACAGGTTTCTTACAAATAAGGAAAATTACTTT
GCTAGT

[Blast] [AA Translation]

Associated Loci (1)

Locus symbol	Locus name	Gene activity
DQ294256	40S ribosomal protein

Genomic locations (0)

None

Library representation (5)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Solanum tuberosum	IVROOT	Root	5850	1
Solanum tuberosum	PPC	leaf 6 week old	5062	2
Solanum tuberosum	STM	mixed tissues	14805	4
Solanum tuberosum	SWST	Stolon	5942	1
Solanum tuberosum	TUBS	Tubers	5976	1

mRNA member sequences (9)

To view details for a particular member sequence, click the SGN-E# identifier.

Markers Information (0)

Expression Data (0)

Annotations (manual: 0 | blast: 3 | go: 0 )

Protein prediction analysis (2)

Gene Family (6)

Family Build (I value*)	Family ID	Annotation**	# Members
1.2	935	S3_euk_arch Ribosomal_S3_C S3_bact KH_TYPE_2 KH	20
2	22748	S3_euk_arch Ribosomal_S3_C S3_bact KH_TYPE_2 KH	20
5	56890	S3_euk_arch Ribosomal_S3_C S3_bact KH_TYPE_2 KH	20
1.1	102210	KH prokaryotic type Ribosomal protein S3 C-terminal - Molecular Function: structural constituent of ribosome (GO:0003735) - Cellular Component: intracellular (GO:0005622) - Cellular Component: ribosome (GO:0005840) - Biological Process: protein biosynthesis (GO:0006412) KH type 2 - Molecular Function: nucleic acid binding (GO:0003676) Eukaryotic/archaeal ribosomal protein S3 - Molecular Function: structural constituent of ribosome (GO:0003735) - Biological Process: protein biosynthesis (GO:0006412) - Cellular Component: small ribosomal subunit (GO:0015935)	19
2	119191	Ribosomal protein S3 C-terminal - Molecular Function: structural constituent of ribosome (GO:0003735) - Cellular Component: intracellular (GO:0005622) - Cellular Component: ribosome (GO:0005840) - Biological Process: protein biosynthesis (GO:0006412) Eukaryotic/archaeal ribosomal protein S3 - Molecular Function: structural constituent of ribosome (GO:0003735) - Biological Process: protein biosynthesis (GO:0006412) - Cellular Component: small ribosomal subunit (GO:0015935) KH type 2 - Molecular Function: nucleic acid binding (GO:0003676) KH prokaryotic type	19
5	129545	Ribosomal protein S3 C-terminal - Molecular Function: structural constituent of ribosome (GO:0003735) - Cellular Component: intracellular (GO:0005622) - Cellular Component: ribosome (GO:0005840) - Biological Process: protein biosynthesis (GO:0006412) Eukaryotic/archaeal ribosomal protein S3 - Molecular Function: structural constituent of ribosome (GO:0003735) - Biological Process: protein biosynthesis (GO:0006412) - Cellular Component: small ribosomal subunit (GO:0015935) KH type 2 - Molecular Function: nucleic acid binding (GO:0003676) KH prokaryotic type	19

*i value: controls inflation, a process to dissipate family clusters. At high i value, genes tend to be separated into different families.
**Annotation: the most common InterPro annotation(s) of the Arabidopsis members in the family.

Preceding Unigenes (2)

Unigene	Build
SGN-U243123	Solanum tuberosum #3
SGN-U243150	Solanum tuberosum #3

Accessions	Seedlots
Accessions		Breeding Program	Seedlot Name	Contents	Seedlot Location	Count	Weight(g)

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