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Unigene SGN-U268442

Unigene Basic Information

Unigene ID:	SGN-U268442
Unigene Build:	Solanum tuberosum #4
Date:	2005-05-04
Organism:	S.tuberosum
Alternative ID:	268442
mRNA sequence:	Length: 335 bp

>SGN-U268442 Solanum tuberosum #4 (3 members)
TCCATTGACCTATTCAAGGCCATCGAAGTGTACCTCCTCGCTAACCCTTCTGTCTATGCTTAAGTATGGAAATATGAATCAGATCCACAC
TTGAGAGATGATCAGGACGTGTTGCGATATTATATAATTAAATATAATTATATATACATGTGTGTTATTTCTAAAAAGTTTAAACTTTTA
GCTGAGACGAAAAAGTTGATCAAAAGTTCCATGGGCTTGAGTTTTTACATTGTTATAGTTTTTTGTTGTGTGTGTTTGTTCTTTCCAATT
GTATGACATGGAAAGAACTTCCAATAAATAATATTGAAAGCTTTGATTTAAAAAAAAAAAAAAAA

[Blast] [AA Translation]

Associated Loci (1)

Locus symbol	Locus name	Gene activity
AF500589	pathogenesis related protein 10

Genomic locations (0)

None

Library representation (3)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Solanum tuberosum	CSWB	Tubers	6124	1
Solanum tuberosum	PPC	leaf 6 week old	5062	1
Solanum tuberosum	STM	mixed tissues	14805	1

mRNA member sequences (3)

To view details for a particular member sequence, click the SGN-E# identifier.

Markers Information (0)

Unigene Mapped Marker Information

No member sequence or clone is mapped.

COSII Markers Information

None cosii markers associated to this unigene.

Expression Data (0)

No expression data was found associated to this unigene

Annotations (manual: 0 | blast: 0 | go: 0 )

Manual annotations

None manual annotation was found for this unigene

Blast Annotations [Show All]

Database	Program	Best Match
genbank	blastx	No significant hits ( or none blast was used over this dataset )

arabidopsis	blastx	No significant hits ( or none blast was used over this dataset )

swissprot	blastx	No significant hits ( or none blast was used over this dataset )

GO Terms Annotations

No Gene Ontology annotation

Protein prediction analysis (2)

Prediction based on longest six frame method

>SGN-P210282 (70 Aa)

VWKYESDPHLRDDQDVLRYYIIKYNYIYMCVISKKFKLLAETKKLIKSSMGLSFYIVIVFCCVCLFFPIV

SignalP predicts non-secretion with a score of 0.034

No InterPro domain matches or not analyzed.

Prediction based on ESTScan [ Show ESTScan Detail]

>SGN-P71451 (20 Aa)

SIDLFKAIEVYLLANPSVYA

SignalP predicts non-secretion with a score of 0.176

No InterPro domain matches or not analyzed.

Gene Family (3)

Family Build (I value*)	Family ID	Annotation**	# Members
1.2	88	Bet_v_I	140
2	22276	Cyt_CIAB Cyt_CI CytC_heme_BS	38
5	56647		27

*i value: controls inflation, a process to dissipate family clusters. At high i value, genes tend to be separated into different families.
**Annotation: the most common InterPro annotation(s) of the Arabidopsis members in the family.

Preceding Unigenes (1)

Unigene	Build
SGN-U243213	Solanum tuberosum #3

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