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Unigene SGN-U205943

Unigene Basic Information

Unigene ID:	SGN-U205943
Unigene Build:	Solanum melongena #2
Date:	2004-01-12
Organism:	S.melongena
Alternative ID:	205943
mRNA sequence:	Length: 457 bp

>SGN-U205943 Solanum melongena #2 (2 members)
TAGTATTTGAGTTGATCAAATGGCTTCCATGACAATGACAACCTCCTTGGCCGGCAGCTCGGTCGCGGCCCTAACCAAAGCCCCGATCAC
GAATAATCGTGCTAGGGTTGTTGTAGTGAAGGCCAGCTCCAATGTGTCTGAGAAAGAAAATGTTGTAATGAGCGACAAGAAGGAGATCAA
CAACAATGGTGGTGGTCGTAGGGAGTTGTTCTTTGGCATGGCGGCCGCTGCTGCATGTTCTGTAGCACAGGCCGCCATGGCAGACGATGA
GCCGAAGCGCGGCTCACCGGAGGCCAAGAAGAAGTATTTTCAAGTTTGTGTCTCAAATCCAACTGCTAGAATTTGCCGCAATGCAACTTA
GAAGGGCAAGTCTTTTGTCTATTTATTCATGTACTTATGCTATGGTTTTTAATAATGTGAAAAAATGAAAAAAATTTGTAAAAAAAAAAA
AAAAAAA

[Blast] [AA Translation]

Associated Loci (0)

None

Genomic locations (0)

None

Library representation (1)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Solanum melongena	cSML	buds & flowers anthesis-stage flowers, 4-8 week old plants	4031	2

mRNA member sequences (2)

To view details for a particular member sequence, click the SGN-E# identifier.

Markers Information (0)

Unigene Mapped Marker Information

No member sequence or clone is mapped.

COSII Markers Information

None cosii markers associated to this unigene.

Expression Data (0)

No expression data was found associated to this unigene

Annotations (manual: 0 | blast: 2 | go: 0 )

Manual annotations

None manual annotation was found for this unigene

Blast Annotations [Show All]

Database	Program	Best Match	Score	E-value	Identity	Alignment Length	Frame
genbank	blastx	gi\|21537121\|gb\|AAM61462.1\|	76.26	1.5e-13	52.25	333 bp (72.9%)	2
Description:	photosystem II [Arabidopsis thaliana]
arabidopsis	blastx	At1g51400.1	73.56	4.6e-14	50.45	333 bp (72.9%)	2
Description:	At1g51400.1 68408.m05308 photosystem II 5 KD protein 100% identical to GI:4836947 (F5D21.10)
swissprot	blastx	No significant hits ( or none blast was used over this dataset )

GO Terms Annotations

No Gene Ontology annotation

Protein prediction analysis (2)

Prediction based on ESTScan [ Show ESTScan Detail]

>SGN-P29676 (113 Aa)

MASMTMTTSLAGSSVAALTKAPITNNRARVVVVKASSNVSEKENVVMSDKKEINNNGGGRRELFFGMAAAAACSVAQAAMADDEPKRGSP
EAKKKYFQVCVSNPTARICRNAT

SignalP predicts secretion with a score of 0.457

No InterPro domain matches or not analyzed.

Prediction based on longest six frame method

>SGN-P208343 (116 Aa)

VDQMASMTMTTSLAGSSVAALTKAPITNNRARVVVVKASSNVSEKENVVMSDKKEINNNGGGRRELFFGMAAAAACSVAQAAMADDEPKR
GSPEAKKKYFQVCVSNPTARICRNAT

SignalP predicts non-secretion with a score of 0.357

No InterPro domain matches or not analyzed.

Gene Family (6)

Family Build (I value*)	Family ID	Annotation**	# Members
1.2	2179	Tat	8
2	24390	Tat	8
5	58431	Tat	8
1.1	101435	NAD-dependent epimerase/dehydratase - Molecular Function: catalytic activity (GO:0003824) - Biological Process: nucleotide-sugar metabolism (GO:0009225) - Molecular Function: NAD binding (GO:0051287)	166
2	120127		10
5	130415		10

*i value: controls inflation, a process to dissipate family clusters. At high i value, genes tend to be separated into different families.
**Annotation: the most common InterPro annotation(s) of the Arabidopsis members in the family.

Preceding Unigenes (0)

None

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