Sol Genomics Network

Unigene SGN-U271788

Unigene Basic Information

Unigene ID:	SGN-U271788
Unigene Build:	Solanum tuberosum #4
Date:	2005-05-04
Organism:	S.tuberosum
Alternative ID:	271788
mRNA sequence:	Length: 682 bp

>SGN-U271788 Solanum tuberosum #4 (3 members)
ATGCACAAGCGGTGGATGGTCCGGCATCAGCCCAGTTCACATGGACTGTCGAAAATTTTTCGAGGTTGAATGTGAAGAAGTTGTACTCTA
ATCCTTTTAATGTAGGAGGATTTAAATGGAGGATTCTGATATTCCCAAAAGGGAACAATGCAGACCATTTATCAATGTATTTAGATGTGG
CGGATGCTGCAACATTGCCTTATGGTTGGAGTAGATTTGCTCAGTTTAGCTTAGCTGTTGTCAATCAAATTCATGGCATGTTCACACTGA
GAAAAGATAGTCAACACCTTTTTACAGCAAAAGAGAAAGACTGGGGTTTCACAAAGTTCTTGCCTCCTACTGAATTAAATGATCCTGGAA
AAGGTTTTCTTGTGGATGATAAAGTCATAATTGAAGCTTATATTACTTTTCCTAAAGTTCATTGATTGCTGAAAGTTTTAGGTAAGGATA
TAAACATGTAGAGATATTTCGTACCTAGGGTTTAAACCCGTGGTTTCTAGTTAAGGATGGATGCATCCTATCCGACCACCACAACCTTTG
GTGGCAAGATCACATTACCTATCCATCCATTTTATTTGAATGCAAGTTATTGATAGACAAGCTTGAAAGAACCCATGTTTTATTATGATG
CATATTAGTATATCAAATTAATTCAAAAATCAGTTTAGCGTAAAAAAAAAAA

[Blast] [AA Translation]

Associated Loci (0)

None

Genomic locations (0)

None

Library representation (3)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Solanum tuberosum	STM	mixed tissues	14805	1
Solanum tuberosum	TUBS	Tubers	5976	1
Solanum tuberosum	cSTC	sprouting eyes from tubers 12-14 weeks post harvest	870	1

mRNA member sequences (3)

To view details for a particular member sequence, click the SGN-E# identifier.

Markers Information (0)

Expression Data (0)

Annotations (manual: 0 | blast: 3 | go: 0 )

Protein prediction analysis (2)

Gene Family (6)

Family Build (I value*)	Family ID	Annotation**	# Members
1.2	45	MATH	248
2	22467	MATH SASP Peptidase_C19	28
5	56654	MATH SASP Peptidase_C19	27
1.1	101414	TRAF-like	237
2	118905	TRAF-like MATH Small acid-soluble spore protein alpha/beta type - Molecular Function: double-stranded DNA binding (GO:0003690) - Biological Process: DNA topological change (GO:0006265) TRAF-type Peptidase C19 ubiquitin carboxyl-terminal hydrolase 2 - Molecular Function: cysteine-type endopeptidase activity (GO:0004197) - Molecular Function: ubiquitin thiolesterase activity (GO:0004221) - Biological Process: ubiquitin-dependent protein catabolism (GO:0006511)	26
5	129329	TRAF-like MATH Small acid-soluble spore protein alpha/beta type - Molecular Function: double-stranded DNA binding (GO:0003690) - Biological Process: DNA topological change (GO:0006265) TRAF-type Peptidase C19 ubiquitin carboxyl-terminal hydrolase 2 - Molecular Function: cysteine-type endopeptidase activity (GO:0004197) - Molecular Function: ubiquitin thiolesterase activity (GO:0004221) - Biological Process: ubiquitin-dependent protein catabolism (GO:0006511)	25

Preceding Unigenes (1)

Unigene	Build
SGN-U246200	Solanum tuberosum #3

Accessions	Seedlots
Accessions		Breeding Program	Seedlot Name	Contents	Seedlot Location	Count	Weight(g)

Attribute	Value
Project Name:
Start Date:
End Date:
Event Type:
Event Description:
Event Web URL: