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Unigene SGN-U273531

Unigene Basic Information

Unigene ID:	SGN-U273531
Unigene Build:	Solanum tuberosum #4
Date:	2005-05-04
Organism:	S.tuberosum
Alternative ID:	273531
mRNA sequence:	Length: 371 bp

>SGN-U273531 Solanum tuberosum #4 (3 members)
TTTTTTTTTTTTTTTTGGATGACCAAATCTCCATCCAGAACCTAACATTTGAGCCAAATGCAGACTACAAACCTCGGGATACTGGACTTA
GTTTGCTTGGCACAAGGCCCGAACTTGTGACCTAAGACACAAGCCCCTCAACCTTGCCATTTGAGCTGATGACTTGACCTTGGGGTAAAA
AGTCTGTGGACCCTTCCTTCGAGGGCGCCTTACCGAAAAGGTTGCCCCTTTGCAACCCTCAAACCTGGGGGGAGGGGAGGCGGGGGGGGG
GGGGCATCTCCTTTCCTTTTTTAATTATTATTATTAATATAAATTTGATTCCATTATTGTTCTCCTGCTTAATGGGCATATGAAATTAGG
TTTTGTCAAAA

[Blast] [AA Translation]

Associated Loci (0)

None

Genomic locations (0)

None

Library representation (3)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Solanum tuberosum	ACDC	Sprouting Tubers	5177	1
Solanum tuberosum	SLMW	Assorted Stolon/Tuber Developmental Series	1368	1
Solanum tuberosum	STM	mixed tissues	14805	1

mRNA member sequences (3)

To view details for a particular member sequence, click the SGN-E# identifier.

Markers Information (0)

Unigene Mapped Marker Information

No member sequence or clone is mapped.

COSII Markers Information

None cosii markers associated to this unigene.

Expression Data (0)

No expression data was found associated to this unigene

Annotations (manual: 0 | blast: 0 | go: 0 )

Manual annotations

None manual annotation was found for this unigene

Blast Annotations [Show All]

Database	Program	Best Match
genbank	blastx	No significant hits ( or none blast was used over this dataset )

arabidopsis	blastx	No significant hits ( or none blast was used over this dataset )

swissprot	blastx	No significant hits ( or none blast was used over this dataset )

GO Terms Annotations

No Gene Ontology annotation

Protein prediction analysis (2)

Prediction based on longest six frame method

>SGN-P215408 (68 Aa)

LKKERRCPPPPASPPPRFEGCKGATFSVRRPRRKGPQTFYPKVKSSAQMARLRGLCLRSQVRALCQAN

SignalP predicts non-secretion with a score of 0.078

No InterPro domain matches or not analyzed.

Prediction based on ESTScan [ Show ESTScan Detail]

>SGN-P76511 (76 Aa)

DDQISIQNLTFEPNADYKPRDTGLSLLGTRPELVPKTQAPQPCHLADDLPWGKKSVDPSFEGALPKRLPLCNPQTW

SignalP predicts non-secretion with a score of 0.033

No InterPro domain matches or not analyzed.

Gene Family (6)

Family Build (I value*)	Family ID	Annotation**	# Members
1.2	2260		8
2	29177		3
5	67345		2
1.1	101663	Zinc finger CCHC-type - Molecular Function: nucleic acid binding (GO:0003676) - Molecular Function: zinc ion binding (GO:0008270)	49
2	121344		7
5	138414		2

*i value: controls inflation, a process to dissipate family clusters. At high i value, genes tend to be separated into different families.
**Annotation: the most common InterPro annotation(s) of the Arabidopsis members in the family.

Preceding Unigenes (1)

Unigene	Build
SGN-U261186	Solanum tuberosum #3

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