Sol Genomics Network

Unigene SGN-U278817

Unigene Basic Information

Unigene ID:	SGN-U278817
Unigene Build:	Solanum tuberosum #4
Date:	2005-05-04
Organism:	S.tuberosum
Alternative ID:	278817
mRNA sequence:	Length: 687 bp

>SGN-U278817 Solanum tuberosum #4 (4 members)
GTAGAACCCAAAATCATGGGCCGCAAGAGAGACAGAACCCACTTCAATCGCCACGTCCCGTACTCCTTCCCCAAGCGCCGCCGTCCAACA
CCAATCACCGACGATCCATTGCCGGTGCCGGAAGACAACTCATCGTCCACCAAGCAACAGCCGGCTACTGTGGTGGTTATTGGGGTTCCT
TCTGAATGCTCTGTGCTCGACATTAAATCTCGTTTTGAGATTTATGGATCCATCTCTCGAACTCGTATGGACCCTAATGGTCTCGCTCAT
ATCACTTTCCGGTCCAATGATTCTGCCCAATCTGCTGTTGAATCTGCCGAAGATTCATCTTTCCCCATTACTCTCCACTCCAAGCCTGTT
CAGGTAATATGGGCAACTGACCATGCATCACAGTGGAAAGAAGGTGTGATGCGAAAGGATGAACTATCCACATCAACGGTTGCATCGAAG
CTAGTTAAAGCAGAAGTGCCACTAAGTAGGCACGGAAGAAGTAATCGACTGGGATCAGCAATTGTGAACCCCCGAGATGAGGATAATGAT
AATGCTGGCGGTAATGTTCGTGCACATGTTAGTACAAAGCTGGTTGAGCCTTACAAGGGTANGGAAATTGTTGCCTATGATGATATTTTG
TAACTTAAAGTCGTTGTTTGAGGGATTGCCTCACTTGTAACATTAGCTATATGGCTT

[Blast] [AA Translation]

Associated Loci (0)

None

Genomic locations (0)

None

Library representation (3)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Solanum tuberosum	PPC	leaf 6 week old	5062	1
Solanum tuberosum	cPRO	roots in vitro grown stem cuttings	10187	1
Solanum tuberosum	cSTB	leaves and petioles 8 weeks old plants	10327	2

mRNA member sequences (4)

To view details for a particular member sequence, click the SGN-E# identifier.

Markers Information (0)

Expression Data (0)

Annotations (manual: 0 | blast: 3 | go: 0 )

Protein prediction analysis (2)

Gene Family (6)

Family Build (I value*)	Family ID	Annotation**	# Members
1.2	3388		5
2	25691	Homeobox HTH_lambrepressr VlpA_repeat Leu_zip_homeo RNA_rec_mot	6
5	60398		5
1.1	101432	Homeodomain-related - Molecular Function: DNA binding (GO:0003677) - Biological Process: regulation of transcription (GO:0045449) Homeobox - Molecular Function: transcription factor activity (GO:0003700) - Cellular Component: nucleus (GO:0005634) - Biological Process: regulation of transcription DNA-dependent (GO:0006355) - Molecular Function: sequence-specific DNA binding (GO:0043565) Homeodomain-like	183
2	121457	Homeobox - Molecular Function: transcription factor activity (GO:0003700) - Cellular Component: nucleus (GO:0005634) - Biological Process: regulation of transcription DNA-dependent (GO:0006355) - Molecular Function: sequence-specific DNA binding (GO:0043565) Helix-turn-helix motif lambda-like repressor - Molecular Function: transcription factor activity (GO:0003700) - Cellular Component: nucleus (GO:0005634) - Biological Process: regulation of transcription DNA-dependent (GO:0006355) Leucine zipper homeobox-associated - Molecular Function: DNA binding (GO:0003677) - Cellular Component: nucleus (GO:0005634) - Biological Process: regulation of transcription DNA-dependent (GO:0006355) Homeodomain-related - Molecular Function: DNA binding (GO:0003677) - Biological Process: regulation of transcription (GO:0045449) Homeodomain-like Nucleotide-binding alpha-beta plait - Molecular Function: nucleotide binding (GO:0000166) RNA-binding region RNP-1 (RNA recognition motif) - Molecular Function: nucleic acid binding (GO:0003676)	6
5	133009		5

Preceding Unigenes (1)

Unigene	Build
SGN-U251114	Solanum tuberosum #3

Accessions	Seedlots
Accessions		Breeding Program	Seedlot Name	Contents	Seedlot Location	Count	Weight(g)

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