Sol Genomics Network

Unigene SGN-U283702

Unigene Basic Information

Unigene ID:	SGN-U283702
Unigene Build:	Solanum tuberosum #4
Date:	2005-05-04
Organism:	S.tuberosum
Alternative ID:	283702
mRNA sequence:	Length: 545 bp

>SGN-U283702 Solanum tuberosum #4 (2 members)
CTTTAAACAAAGGATGGGCCTCGAAATCTATGACGACGACGAAACAATAGACAAGCCTGCTAGGGTGGCGACATCTTATCCTTCCGGCAC
TGTGATTGCACCCATGGCTGGGCTAGTGGTTAAAGTATTGGTGAAGGATGGGGAGAAAGTTCAGGAGGGACAACCTGTGTTGGTATTAGA
AGCAATGAAGATGGAGCATGTCGTGAAAGCACCAGCTAATGGTTATGTAAGAGGGCTTGAAGTCAAAGTGGGCCAATCGGTCCAAGATGG
TGTTAAACTCTTTGCTCTCAAGGACTGAAATATATCCCGAGGCTATGACATCATTCTACACAACTGAATTTATGACCTTCCTATGAAGAC
TGTACATAAGAATAACAACATTGAGATGTAAAATCTGTTGGAGTTTCATCTTCTGTATTTCAAATACATTTCTTGTAAATGACTTTCCAG
CTCAAAATTTGTCCAGATTAGTGGTATATGATCAGTGGTTGCTCATTCATTGCTAAGATATACGAGCAAAGTTCTTTCTGCAAAAAAAAA
AAAAA

[Blast] [AA Translation]

Associated Loci (0)

None

Genomic locations (0)

None

Library representation (2)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Solanum tuberosum	MXLF	Leaves	6585	1
Solanum tuberosum	STM	mixed tissues	14805	1

mRNA member sequences (2)

To view details for a particular member sequence, click the SGN-E# identifier.

Markers Information (0)

Expression Data (0)

Annotations (manual: 0 | blast: 3 | go: 0 )

Protein prediction analysis (2)

Gene Family (6)

Family Build (I value*)	Family ID	Annotation**	# Members
1.2	717	Biotin_carb_C	26
2	23040	CPase_L_N PurK_ATP Gars CPase_L_D2 Biotin_carb_C D_ala_D_ala RimK_fam AccC PurT Pyruv_carbox	16
5	61590		4
1.1	101898	Carbamoyl-phosphate synthetase large chain N-terminal - Biological Process: metabolism (GO:0008152) - Molecular Function: ligase activity (GO:0016874) ATP-grasp fold - Molecular Function: catalytic activity (GO:0003824) Carbamoyl-phosphate synthase L chain ATP-binding - Molecular Function: ATP binding (GO:0005524)	29
2	119756	Biotin carboxylation region - Molecular Function: ATP binding (GO:0005524) - Molecular Function: biotin binding (GO:0009374) - Molecular Function: ligase activity (GO:0016874) Carbamoyl-phosphate synthetase large chain N-terminal - Biological Process: metabolism (GO:0008152) - Molecular Function: ligase activity (GO:0016874) Carbamoyl-phosphate synthase L chain ATP-binding - Molecular Function: ATP binding (GO:0005524) Biotin carboxylase C-terminal - Molecular Function: ligase activity (GO:0016874) ATP-grasp fold - Molecular Function: catalytic activity (GO:0003824) Rudiment single hybrid motif	12
5	132220	Biotin carboxylation region - Molecular Function: ATP binding (GO:0005524) - Molecular Function: biotin binding (GO:0009374) - Molecular Function: ligase activity (GO:0016874) Carbamoyl-phosphate synthetase large chain N-terminal - Biological Process: metabolism (GO:0008152) - Molecular Function: ligase activity (GO:0016874) Carbamoyl-phosphate synthase L chain ATP-binding - Molecular Function: ATP binding (GO:0005524) Biotin/lipoyl attachment Biotin carboxylase C-terminal - Molecular Function: ligase activity (GO:0016874) Single hybrid motif ATP-grasp fold - Molecular Function: catalytic activity (GO:0003824) Biotin-binding site - Molecular Function: biotin binding (GO:0009374) Rudiment single hybrid motif	5

*i value: controls inflation, a process to dissipate family clusters. At high i value, genes tend to be separated into different families.
**Annotation: the most common InterPro annotation(s) of the Arabidopsis members in the family.

Preceding Unigenes (1)

Unigene	Build
SGN-U263039	Solanum tuberosum #3

Accessions	Seedlots
Accessions		Breeding Program	Seedlot Name	Contents	Seedlot Location	Count	Weight(g)

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