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Unigene SGN-U285028

Unigene Basic Information

Unigene ID:	SGN-U285028
Unigene Build:	Solanum tuberosum #4
Date:	2005-05-04
Organism:	S.tuberosum
Alternative ID:	285028
mRNA sequence:	Length: 463 bp

>SGN-U285028 Solanum tuberosum #4 (2 members)
CTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTCGCTTTTTTCATCAACTCCATAAAATTTTGTAGTTACATTAACTGTACTGACATT
TCATACTTTAAAACAAGTCCGTATAATCATGAAGAACTCAGTCAAGTGATTTGTGTAGCTTTCTAAACATCATTCAAGTTGAGGATTCCA
CAATGGCAGATAGTATTACTGGTTTAATCCATATTACTATTTGGATTTTGGTTTGAATTTTAAATGGATATCTGAGGCATGAGCAGCAGC
TCCAAAGGTGAATTCCTGGGGAGGAACGCCAATATCAGGACGAGCGAAAATTGATGCAGCACCAGAAAAGTTGAAGGCTGGAATTTGAAC
GGAATCACTAGGCTTTGGGTAGTTAAAGCTCACGGATGGCAGCACAGGAGAAGAGAAGACTGGCATGCCAAATGCAGCCTGGTTCTCCAG
TGACCCGAAGATC

[Blast] [AA Translation]

Associated Loci (0)

None

Genomic locations (0)

None

Library representation (2)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Solanum tuberosum	MXLF	Leaves	6585	1
Solanum tuberosum	SWST	Stolon	5942	1

mRNA member sequences (2)

To view details for a particular member sequence, click the SGN-E# identifier.

Markers Information (0)

Unigene Mapped Marker Information

No member sequence or clone is mapped.

COSII Markers Information

None cosii markers associated to this unigene.

Expression Data (0)

No expression data was found associated to this unigene

Annotations (manual: 0 | blast: 0 | go: 0 )

Manual annotations

None manual annotation was found for this unigene

Blast Annotations [Show All]

Database	Program	Best Match
genbank	blastx	No significant hits ( or none blast was used over this dataset )

arabidopsis	blastx	No significant hits ( or none blast was used over this dataset )

swissprot	blastx	No significant hits ( or none blast was used over this dataset )

GO Terms Annotations

No Gene Ontology annotation

Protein prediction analysis (2)

Prediction based on longest six frame method

>SGN-P227013 (81 Aa)

IFGSLENQAAFGMPVFSSPVLPSVSFNYPKPSDSVQIPAFNFSGAASIFARPDIGVPPQEFTFGAAAHASDIHLKFKPKSK

SignalP predicts non-secretion with a score of 0.161

No InterPro domain matches or not analyzed.

Prediction based on ESTScan [ Show ESTScan Detail]

>SGN-P87576 (81 Aa)

IFGSLENQAAFGMPVFSSPVLPSVSFNYPKPSDSVQIPAFNFSGAASIFARPDIGVPPQEFTFGAAAHASDIHLKFKPKSK

SignalP predicts non-secretion with a score of 0.161

No InterPro domain matches or not analyzed.

Gene Family (6)

Family Build (I value*)	Family ID	Annotation**	# Members
1.2	433	DS_phosphatase TYR_phosphatase	40
2	49470		1
5	90855		1
1.1	101738	Dual specificity protein phosphatase - Biological Process: protein amino acid dephosphorylation (GO:0006470) - Molecular Function: protein tyrosine/serine/threonine phosphatase activity (GO:0008138)	42
2	121032	Dual specificity protein phosphatase - Biological Process: protein amino acid dephosphorylation (GO:0006470) - Molecular Function: protein tyrosine/serine/threonine phosphatase activity (GO:0008138) Tyrosine specific protein phosphatase and dual specificity protein phosphatase - Molecular Function: phosphoprotein phosphatase activity (GO:0004721) - Biological Process: protein amino acid dephosphorylation (GO:0006470)	7
5	131797	Dual specificity protein phosphatase - Biological Process: protein amino acid dephosphorylation (GO:0006470) - Molecular Function: protein tyrosine/serine/threonine phosphatase activity (GO:0008138) Tyrosine specific protein phosphatase and dual specificity protein phosphatase - Molecular Function: phosphoprotein phosphatase activity (GO:0004721) - Biological Process: protein amino acid dephosphorylation (GO:0006470)	6

*i value: controls inflation, a process to dissipate family clusters. At high i value, genes tend to be separated into different families.
**Annotation: the most common InterPro annotation(s) of the Arabidopsis members in the family.

Preceding Unigenes (1)

Unigene	Build
SGN-U262948	Solanum tuberosum #3

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