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Unigene SGN-U286353

Unigene Basic Information

Unigene ID:	SGN-U286353
Unigene Build:	Solanum tuberosum #4
Date:	2005-05-04
Organism:	S.tuberosum
Alternative ID:	286353
mRNA sequence:	Length: 390 bp

>SGN-U286353 Solanum tuberosum #4 (2 members)
CGTAAAGCTACTCTCAGAATCTTTCCGGTGAAAAGGTTTTTGATAGCTGATCACTTTGAGGTTCGATCGTCACCATGACTGGTGCTACAA
ACCAGTTTATATCTGTTAGTCTTGAGGAGCTCAAATTCCAATGAAGACAAGACAGAGATCTCAAACAAAGAGCAGTCTCTAAGGGGAGTC
CCCACTACTTGGTCTTGCAAGTTGCAACCTGTGTCTGTCTCATTGTCTGTGCTATTTTGGAGTAAACCACCAGAAATAGCAAAATGAGCT
TCAGTGAAGGGATAAAGAAACTCAAAAACATAACTGACAGCCAAGCTTGATCTGTACTCAGGGTGTAAAGTGCCATCTTCCGGTACAACT
GCTAGTTTGACTAATTTAAGAGCTCCTTAA

[Blast] [AA Translation]

Associated Loci (0)

None

Genomic locations (0)

None

Library representation (1)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Solanum tuberosum	TUBS	Tubers	5976	2

mRNA member sequences (2)

To view details for a particular member sequence, click the SGN-E# identifier.

Markers Information (0)

Unigene Mapped Marker Information

No member sequence or clone is mapped.

COSII Markers Information

None cosii markers associated to this unigene.

Expression Data (0)

No expression data was found associated to this unigene

Annotations (manual: 0 | blast: 1 | go: 0 )

Manual annotations

None manual annotation was found for this unigene

Blast Annotations [Show All]

Database	Program	Best Match	Score	E-value	Identity	Alignment Length	Frame
genbank	blastx	gi\|10764216\|gb\|AAG22606.1\|AF258809_1	94	5e-18	77.59	174 bp (44.6%)	-1
Description:	aldehyde oxidase [Solanum lycopersicum] >gi14028573\|gb\|AAK52409.1\|AF258813_1 aldehyde oxidase T…
arabidopsis	blastx	No significant hits ( or none blast was used over this dataset )

swissprot	blastx	No significant hits ( or none blast was used over this dataset )

GO Terms Annotations

No Gene Ontology annotation

Protein prediction analysis (2)

Prediction based on ESTScan [ Show ESTScan Detail]

>SGN-P88862 (130 Aa)

KELLKLVKLAVVPEDGTLHPEYRSSLAVSYVFEFLYPFTEAHFAISGGLLQNSTDNETDTGCNLQDQVVGTPLRDCSLFEISVLSSLEFE
LLKTNRYKLVCSTSHGDDRTSKXSAIKNLFTGKILRVALR

SignalP predicts non-secretion with a score of 0.142

No InterPro domain matches or not analyzed.

Prediction based on longest six frame method

>SGN-P228359 (111 Aa)

GALKLVKLAVVPEDGTLHPEYRSSLAVSYVFEFLYPFTEAHFAISGGLLQNSTDNETDTGCNLQDQVVGTPLRDCSLFEISVLSSLEFEL
LKTNRYKLVCSTSHGDDRTSK

SignalP predicts non-secretion with a score of 0.169

No InterPro domain matches or not analyzed.

Gene Family (5)

Family Build (I value*)	Family ID	Annotation**	# Members
1.2	368	2Fe2S_fd_BS 2Fe-2S_bind	46
2	49853		1
5	91359		1
1.1	101717	Aldehyde oxidase and xanthine dehydrogenase molybdopterin binding - Biological Process: electron transport (GO:0006118) - Molecular Function: oxidoreductase activity (GO:0016491)	43
2	118621	Aldehyde oxidase and xanthine dehydrogenase molybdopterin binding - Biological Process: electron transport (GO:0006118) - Molecular Function: oxidoreductase activity (GO:0016491)	42

*i value: controls inflation, a process to dissipate family clusters. At high i value, genes tend to be separated into different families.
**Annotation: the most common InterPro annotation(s) of the Arabidopsis members in the family.

Preceding Unigenes (0)

None

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