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Unigene SGN-U287332

Unigene Basic Information

Unigene ID:	SGN-U287332
Unigene Build:	Solanum tuberosum #4
Date:	2005-05-04
Organism:	S.tuberosum
Alternative ID:	287332
mRNA sequence:	Length: 227 bp

>SGN-U287332 Solanum tuberosum #4 (1 members)
CCGGCGGCATTCACAAGGTGCAGTCTTCCGGTGTAGCGAAAAGGAGGAAGTGCCAAGGAGCAACGTAATGAATGCAAAAAAGTGGAGAGG
AATTCGTGAAGAACTTCATTGGGTGCCAGAATCCAGTTACCGGTTACTACAGGCCGGAAGGAACAAGCAAATGAAATTGACGCTTGCTGA
GCTTCGGAAGATGCTGTTGAAAAACAGAATCTGGAAGCAACTGAAAT

[Blast] [AA Translation]

Associated Loci (1)

Locus symbol	Locus name	Gene activity
DQ200360	DQ200360

Genomic locations (0)

None

Library representation (1)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Solanum tuberosum	cSTE	periderm and subperiderm 24 and 48 hour, and 5 and 7 day	5425	1

mRNA member sequences (1)

Alignment image suppressed for unigene with only one aligned EST SGN-E483104
[Show Image]

Markers Information (0)

Unigene Mapped Marker Information

No member sequence or clone is mapped.

COSII Markers Information

None cosii markers associated to this unigene.

Expression Data (0)

No expression data was found associated to this unigene

Annotations (manual: 0 | blast: 0 | go: 0 )

Manual annotations

None manual annotation was found for this unigene

Blast Annotations [Show All]

Database	Program	Best Match
genbank	blastx	No significant hits ( or none blast was used over this dataset )

arabidopsis	blastx	No significant hits ( or none blast was used over this dataset )

swissprot	blastx	No significant hits ( or none blast was used over this dataset )

GO Terms Annotations

No Gene Ontology annotation

Protein prediction analysis (2)

Prediction based on longest six frame method

>SGN-P229374 (76 Aa)

ISVASRFCFSTASSEAQQASISFACSFRPVVTGNWILAPNEVLHEFLSTFLHSLRCSLALPPFRYTGRLHLVNAAG

SignalP predicts non-secretion with a score of 0.166

No InterPro domain matches or not analyzed.

Prediction based on ESTScan [ Show ESTScan Detail]

>SGN-P97635 (76 Aa)

GGIHKVQSSGVAKGGSAKEQRNXMQKSGEEFVKNFIGCQNPVTGYYRPEGXKQMKLTLAXASEDAVEKQNLEATEX

SignalP predicts non-secretion with a score of 0.031

No InterPro domain matches or not analyzed.

Gene Family (5)

Family Build (I value*)	Family ID	Annotation**	# Members
1.2	617	LEA_3	30
2	50071		1
5	91655		1
1.1	101763	Late embryogenesis abundant protein 3 - Biological Process: response to stress (GO:0006950)	39
2	118688	Late embryogenesis abundant protein 3 - Biological Process: response to stress (GO:0006950)	35

*i value: controls inflation, a process to dissipate family clusters. At high i value, genes tend to be separated into different families.
**Annotation: the most common InterPro annotation(s) of the Arabidopsis members in the family.

Preceding Unigenes (1)

Unigene	Build
SGN-U259507	Solanum tuberosum #3

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