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Unigene SGN-U288311

Unigene Basic Information

Unigene ID:	SGN-U288311
Unigene Build:	Solanum tuberosum #4
Date:	2005-05-04
Organism:	S.tuberosum
Alternative ID:	288311
mRNA sequence:	Length: 416 bp

>SGN-U288311 Solanum tuberosum #4 (1 members)
TCACAATGCTCTCTCGGTTTCATCTCCAAATTCCTCACATTCTCCGGCTGTTTAACCCAAATTTTCTCCCAAAGACCCAGCTTCATAAAC
CCTAAACCCATTTCCCCTAAACCATATTTGTTCCCCCATTATCTTCTCCACGCGTTAACAACAACAACAACAACAACATATAACAACAAT
AACAACAGTAATGGCAGAAATTCGGATCCTGATTTCTGGAAACTCTCTTCTGAAACCGAGCAATCAGTGTTCAATGAAGTACTCAGAACA
GTGTTGAGGGAATAGGAAAGGATGATGTGAGTTGGGCTAATGGCAGAAGCAAGCAGAGTGGTGATGTGTTTAAGGAAGCTGGTGCAAGTG
CAAGGGTGCGTGTTGGTGGTCGGGGAGGAGATTTGGGCTACTGCTGAAGGGTATAA

[Blast] [AA Translation]

Associated Loci (0)

None

Genomic locations (0)

None

Library representation (1)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Solanum tuberosum	CSWB	Tubers	6124	1

mRNA member sequences (1)

Alignment image suppressed for unigene with only one aligned EST SGN-E595475
[Show Image]

Markers Information (0)

Unigene Mapped Marker Information

No member sequence or clone is mapped.

COSII Markers Information

None cosii markers associated to this unigene.

Expression Data (0)

No expression data was found associated to this unigene

Annotations (manual: 0 | blast: 0 | go: 0 )

Manual annotations

None manual annotation was found for this unigene

Blast Annotations [Show All]

Database	Program	Best Match
genbank	blastx	No significant hits ( or none blast was used over this dataset )

arabidopsis	blastx	No significant hits ( or none blast was used over this dataset )

swissprot	blastx	No significant hits ( or none blast was used over this dataset )

GO Terms Annotations

No Gene Ontology annotation

Protein prediction analysis (2)

Prediction based on ESTScan [ Show ESTScan Detail]

>SGN-P98589 (138 Aa)

TMLSRFHLQIPHILRLFNPNFLPKTQLHKPXTHFPXTIFVPPLSSPRVNNNNNNNNNNNNNSNGRNSDPDFWKLSSETEQSVFNEXTQNS
VEGIGKDDVSWANGRSKQSGDVFKEAGASARVRVGGGEEIWATAEGYX

SignalP predicts non-secretion with a score of 0.368

No InterPro domain matches or not analyzed.

Prediction based on longest six frame method

>SGN-P230380 (95 Aa)

LYPSAVAQISSPTTNTHPCTCTSFLKHITTLLASAISPTHIILSYSLNTVLSTSLNTDCSVSEESFQKSGSEFLPLLLLLLLYVVVVVVV
NAWRR

SignalP predicts non-secretion with a score of 0.187

No InterPro domain matches or not analyzed.

Gene Family (6)

Family Build (I value*)	Family ID	Annotation**	# Members
1.2	1302	Ribosomal_S9	14
2	26365		5
5	60364		5
1.1	102586	Ribosomal protein S9 - Molecular Function: structural constituent of ribosome (GO:0003735) - Cellular Component: intracellular (GO:0005622) - Cellular Component: ribosome (GO:0005840) - Biological Process: protein biosynthesis (GO:0006412)	12
2	122809		5
5	132994		5

*i value: controls inflation, a process to dissipate family clusters. At high i value, genes tend to be separated into different families.
**Annotation: the most common InterPro annotation(s) of the Arabidopsis members in the family.

Preceding Unigenes (0)

None

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