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Unigene SGN-U288315

Unigene Basic Information

Unigene ID:	SGN-U288315
Unigene Build:	Solanum tuberosum #4
Date:	2005-05-04
Organism:	S.tuberosum
Alternative ID:	288315
mRNA sequence:	Length: 370 bp

>SGN-U288315 Solanum tuberosum #4 (1 members)
CTAAATCCTAGCACCGCCAGCTTCTGAATCGTTTTTCGGATCAAATGGGCTCCCTCCTCCCCTCAATGTTCCGCATCTGATCTGCAAATC
CTTCAATCCCCTACAGATCGAACAATCACTAAATCTCTCTGCGCAAGGTCTAGGGTTTTCATCACGTATTCGTCATTCTCACCTTCGTTG
GAGAAGATTTCTGGATCTCGCAATTCTAGGGTTCTTCAGATCCAATCGGTTTTTGAATGCGCATGTGAAATTCTCTATGTTTTTTTGATA
ATTGAGGAGCATAGATCGATTTGATCTCGGATCGATTTGTTAGTGTATTGAAACTTATAATTTTCGGAGATTATTATTGAAAATGCCTGT
GAAAGTAGCG

[Blast] [AA Translation]

Associated Loci (0)

None

Genomic locations (0)

None

Library representation (1)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Solanum tuberosum	cSTA	Axillary buds of stemp explants; swelling stolons; growing stolons; growing sink-tubers 1 to 3 days (plates 1-20), 4 to 6 days (plates 21-40), 7 to 10 days (plates 41-60)	10537	1

mRNA member sequences (1)

Alignment image suppressed for unigene with only one aligned EST SGN-E436898
[Show Image]

Markers Information (0)

Unigene Mapped Marker Information

No member sequence or clone is mapped.

COSII Markers Information

None cosii markers associated to this unigene.

Expression Data (0)

No expression data was found associated to this unigene

Annotations (manual: 0 | blast: 0 | go: 0 )

Manual annotations

None manual annotation was found for this unigene

Blast Annotations [Show All]

Database	Program	Best Match
genbank	blastx	No significant hits ( or none blast was used over this dataset )

arabidopsis	blastx	No significant hits ( or none blast was used over this dataset )

swissprot	blastx	No significant hits ( or none blast was used over this dataset )

GO Terms Annotations

No Gene Ontology annotation

Protein prediction analysis (2)

Prediction based on longest six frame method

>SGN-P230384 (88 Aa)

IVFRIKWAPSSPQCSASDLQILQSPTDRTITKSLCARSRVFITYSSFSPSLEKISGSRNSRVLQIQSVFECACEILYVFLIIEEHRSI

SignalP predicts non-secretion with a score of 0.184

No InterPro domain matches or not analyzed.

Prediction based on ESTScan [ Show ESTScan Detail]

>SGN-P98593 (97 Aa)

LNPAPPASESVFRIKWAPSSPQCSASDLQILQSPTDRTITKSLCARSRVFITYSSFSPSLEKISGSRNSRVLQIQSVFECACEILYVFLI
IEEHRSI

SignalP predicts non-secretion with a score of 0.073

No InterPro domain matches or not analyzed.

Gene Family (5)

Family Build (I value*)	Family ID	Annotation**	# Members
1.2	1833	Syntaxin_N T_SNARE	10
2	23883	Syntaxin_N T_SNARE	10
5	91910		1
1.1	102290	t-snare	17
2	120759	Syntaxin N-terminal - Cellular Component: membrane (GO:0016020) Target SNARE coiled-coil region t-snare Syntaxin/epimorphin family - Biological Process: intracellular protein transport (GO:0006886) - Molecular Function: protein transporter activity (GO:0008565) - Cellular Component: membrane (GO:0016020)	8

*i value: controls inflation, a process to dissipate family clusters. At high i value, genes tend to be separated into different families.
**Annotation: the most common InterPro annotation(s) of the Arabidopsis members in the family.

Preceding Unigenes (1)

Unigene	Build
SGN-U245750	Solanum tuberosum #3

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