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Unigene SGN-U289528

Unigene Basic Information

Unigene ID:	SGN-U289528
Unigene Build:	Solanum tuberosum #4
Date:	2005-05-04
Organism:	S.tuberosum
Alternative ID:	289528
mRNA sequence:	Length: 398 bp

>SGN-U289528 Solanum tuberosum #4 (1 members)
AGCCAATATTTGAAAAGGCTTGTCCGCTGCTACTAGATCAACGCGCCCGCACTTCTTCTCTGACCTTTAAATTACACAAATTTTCACCTT
TAAAGACTAAATTAGAGACTATTCTTGGAAAAAGAGCATCTCTTTGTTCCTTATTGAATCGATCGATCGATCTATCTGCAGAGAACACGG
AATGGCAACTTTTGGAGGGACAACACATAATTGTAAGGCCTGTGAGAAAACTGTCTACTTGGTGGATCAACTTAAGGCTGACAGCAGGGT
ATATCACAAGGCTTGTATCAGATGTAATCATTGCCAGGGTACTCTTAAGCTAGGTAACTACAATTCCTATGAAGGAGTTTCCTACTGCAG
ACCTCACTTTGATCAACTATTCACAATGACTGGAAGCC

[Blast] [AA Translation]

Associated Loci (0)

None

Genomic locations (0)

None

Library representation (1)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Solanum tuberosum	TUBS	Tubers	5976	1

mRNA member sequences (1)

Alignment image suppressed for unigene with only one aligned EST SGN-E608673
[Show Image]

Markers Information (0)

Unigene Mapped Marker Information

No member sequence or clone is mapped.

COSII Markers Information

None cosii markers associated to this unigene.

Expression Data (0)

No expression data was found associated to this unigene

Annotations (manual: 0 | blast: 3 | go: 0 )

Manual annotations

None manual annotation was found for this unigene

Blast Annotations [Show All]

Database	Program	Best Match	Score	E-value	Identity	Alignment Length	Frame
genbank	blastx	gi\|113205158\|gb\|AAX95760.2\|	135	1e-30	81.94	216 bp (54.3%)	3
Description:	Pollen-specific protein SF3, putative [Solanum lycopersicum]
arabidopsis	blastx	At1G10200.1	120	2e-28	75.36	207 bp (52.0%)	3
Description:	transcription factor LIM, putative \| chr1:3346679-3347765 REVERSE
swissprot	blastx	P29675	112	5e-25	68.06	216 bp (54.3%)	3
Description:	Pollen-specific protein SF3 OS=Helianthus annuus GN=SF3 PE=2 SV=1

GO Terms Annotations

No Gene Ontology annotation

Protein prediction analysis (2)

Prediction based on longest six frame method

>SGN-P231639 (106 Aa)

PIFEKACPLLLDQRARTSSLTFKLHKFSPLKTKLETILGKRASLCSLLNRSIDLSAENTEWQLLEGQHIIVRPVRKLSTWWINLRLTAGY
ITRLVSDVIIARVLLS

SignalP predicts non-secretion with a score of 0.109

No InterPro domain matches or not analyzed.

Prediction based on ESTScan [ Show ESTScan Detail]

>SGN-P99750 (73 Aa)

MATFGGTTHNCKACEKTVYLVDQLKADSRVYHKACIRCNHCQGTLKLGNYNSYEGVSYCRPHFDQLFTMTGSX

SignalP predicts non-secretion with a score of 0.084

No InterPro domain matches or not analyzed.

Gene Family (6)

Family Build (I value*)	Family ID	Annotation**	# Members
1.2	499	LIM	36
2	22310	LIM	36
5	56514	LIM	35
1.1	101780	LIM zinc-binding - Molecular Function: zinc ion binding (GO:0008270)	37
2	118676	LIM zinc-binding - Molecular Function: zinc ion binding (GO:0008270)	36
5	129140	LIM zinc-binding - Molecular Function: zinc ion binding (GO:0008270)	36

*i value: controls inflation, a process to dissipate family clusters. At high i value, genes tend to be separated into different families.
**Annotation: the most common InterPro annotation(s) of the Arabidopsis members in the family.

Preceding Unigenes (0)

None

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