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Unigene SGN-U290132

Unigene Basic Information

Unigene ID:	SGN-U290132
Unigene Build:	Solanum tuberosum #4
Date:	2005-05-04
Organism:	S.tuberosum
Alternative ID:	290132
mRNA sequence:	Length: 293 bp

>SGN-U290132 Solanum tuberosum #4 (1 members)
GTGGCTCAGAGTACAAAACATTCATTTGTCTTCCCCAAAATATACTGATCCAAGGAGTTTCTCAGCTTACCCTCCATCTCTTCAATCATC
TTTCCCATGTTACACAGATGACCCTCTGAGACAGAGAGCTTCATACTCATCTGTCTTCTAATTGATCCAGACAAATTGAATGAGCCTGAT
GACTCATTGTCTGTAGTCAAGGTCAGCATCACTGTACTAGTAAGGCAGTACTGGACAATTTCTTCCTCTTCTGGTCCCACCTCAATAACA
TGTATGGCATCCCAGGCTCCTTC

[Blast] [AA Translation]

Associated Loci (0)

None

Genomic locations (0)

None

Library representation (1)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Solanum tuberosum	TUBS	Tubers	5976	1

mRNA member sequences (1)

Alignment image suppressed for unigene with only one aligned EST SGN-E608598
[Show Image]

Markers Information (0)

Unigene Mapped Marker Information

No member sequence or clone is mapped.

COSII Markers Information

None cosii markers associated to this unigene.

Expression Data (0)

No expression data was found associated to this unigene

Annotations (manual: 0 | blast: 3 | go: 0 )

Manual annotations

None manual annotation was found for this unigene

Blast Annotations [Show All]

Database	Program	Best Match	Score	E-value	Identity	Alignment Length	Frame
genbank	blastx	gi\|30698814\|ref\|NP_177324.2\|	126	9e-28	78.02	273 bp (93.2%)	-3
Description:	F-actin capping protein beta subunit family protein [Arabidopsis thaliana] >gi34222650\|sp\|Q9M9G…
arabidopsis	blastx	At1G71790.1	126	3e-30	78.02	273 bp (93.2%)	-3
Description:	F-actin capping protein beta subunit family protein \| chr1:27000531-27002447 FORWARD
swissprot	blastx	Q9M9G7	126	5e-29	78.02	273 bp (93.2%)	-3
Description:	Probable F-actin-capping protein subunit beta OS=Arabidopsis thaliana GN=At1g71790 PE=2 SV=1

GO Terms Annotations

No Gene Ontology annotation

Protein prediction analysis (2)

Prediction based on ESTScan [ Show ESTScan Detail]

>SGN-P100290 (98 Aa)

EGAWDAIHVIEVGPEEEEIVQYCLTSTVMLTLTTDNESSGSFNLSGSIRRQMSMKLSVSEGHLCNMGKMIEEMEGKLRNSLDQYILGKTN
ECFVPEPX

SignalP predicts non-secretion with a score of 0.038

No InterPro domain matches or not analyzed.

Prediction based on longest six frame method

>SGN-P232253 (95 Aa)

EGAWDAIHVIEVGPEEEEIVQYCLTSTVMLTLTTDNESSGSFNLSGSIRRQMSMKLSVSEGHLCNMGKMIEEMEGKLRNSLDQYILGKTN
ECFVL

SignalP predicts non-secretion with a score of 0.038

No InterPro domain matches or not analyzed.

Gene Family (6)

Family Build (I value*)	Family ID	Annotation**	# Members
1.2	626	Cytidylyltransf G3p_cytidyltrns Cyt_tran_rel	29
2	23506	Cytidylyltransf G3p_cytidyltrns Cyt_tran_rel	12
5	58864	YLP_motif Factin_cap_beta	7
1.1	102074	Cytidyltransferase-related Cytidylyltransferase - Biological Process: biosynthesis (GO:0009058) - Molecular Function: nucleotidyltransferase activity (GO:0016779)	23
2	120646	Cytidylyltransferase - Biological Process: biosynthesis (GO:0009058) - Molecular Function: nucleotidyltransferase activity (GO:0016779) Cytidyltransferase-related	8
5	130906	Cytidylyltransferase - Biological Process: biosynthesis (GO:0009058) - Molecular Function: nucleotidyltransferase activity (GO:0016779) Cytidyltransferase-related	8

*i value: controls inflation, a process to dissipate family clusters. At high i value, genes tend to be separated into different families.
**Annotation: the most common InterPro annotation(s) of the Arabidopsis members in the family.

Preceding Unigenes (0)

None

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