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Unigene SGN-U290461

Unigene Basic Information

Unigene ID:	SGN-U290461
Unigene Build:	Solanum tuberosum #4
Date:	2005-05-04
Organism:	S.tuberosum
Alternative ID:	290461
mRNA sequence:	Length: 430 bp

>SGN-U290461 Solanum tuberosum #4 (1 members)
GAATTCGGCACGAGGAATCTATCACTTCAACCAGATAAGGTAACTACTTAAAATTTGTACATCCAAATCTCTACACATTTCAAAATTGCC
ACTATCCAGCTGTAATCTTCTTTGTATCGTTCCAATTAAGTACGTACTTAATCATATGGCTATGTTAGTCCCAAAAATTATGTTGAATTC
TGGTCATGAAATGCCTCTAATAGGCATGGGAACAGCACCAACGGCACCAACATTACCACCAATTGACCAATTAGTCTCCATTTTTATCGA
TGCTATCGAAGCTGGTTATCGACACTTTGACACCGCTGCGGCCTATGGCTCCGAGGAAGCACTAGGTCGAGCCGTGGCTGACGCGATACA
ACGCGGACTCATAGAGAGCCGTGAAGATGTTTTTATTACATCTAAGTTATGGTGCACCGAAACACATCAT

[Blast] [AA Translation]

Associated Loci (0)

None

Genomic locations (0)

None

Library representation (1)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Solanum tuberosum	cSTB	leaves and petioles 8 weeks old plants	10327	1

mRNA member sequences (1)

Alignment image suppressed for unigene with only one aligned EST SGN-E467236
[Show Image]

Markers Information (0)

Unigene Mapped Marker Information

No member sequence or clone is mapped.

COSII Markers Information

None cosii markers associated to this unigene.

Expression Data (0)

No expression data was found associated to this unigene

Annotations (manual: 0 | blast: 3 | go: 0 )

Manual annotations

None manual annotation was found for this unigene

Blast Annotations [Show All]

Database	Program	Best Match	Score	E-value	Identity	Alignment Length	Frame
genbank	blastx	gi\|270252834\|emb\|CBI19445.1\|	125	1e-27	64.84	273 bp (63.5%)	3
Description:	unnamed protein product [Vitis vinifera]
arabidopsis	blastx	At1G59960.1	89	1e-18	45.74	270 bp (62.8%)	3
Description:	aldo/keto reductase, putative \| chr1:22075075-22076732 REVERSE
swissprot	blastx	P26690	88.6	1e-17	47.92	279 bp (64.9%)	3
Description:	NAD(P)H-dependent 6'-deoxychalcone synthase OS=Glycine max PE=1 SV=1

GO Terms Annotations

No Gene Ontology annotation

Protein prediction analysis (2)

Prediction based on ESTScan [ Show ESTScan Detail]

>SGN-P100598 (79 Aa)

MAMLVPKIMLNSGHEMPLIGMGTAPTAPTLPPIDQLVSIFIDAIEAGYRHFDTAAAYGSEEALGRAVADAIQRRTHREP

SignalP predicts non-secretion with a score of 0.131

No InterPro domain matches or not analyzed.

Prediction based on longest six frame method

>SGN-P232592 (129 Aa)

LLKICTSKSLHISKLPLSSCNLLCIVPIKYVLNHMAMLVPKIMLNSGHEMPLIGMGTAPTAPTLPPIDQLVSIFIDAIEAGYRHFDTAAA
YGSEEALGRAVADAIQRGLIESREDVFITSKLWCTETHH

SignalP predicts non-secretion with a score of 0.223

No InterPro domain matches or not analyzed.

Gene Family (6)

Family Build (I value*)	Family ID	Annotation**	# Members
1.2	104	KCNAB_core Aldo/ket_red	126
2	22321	KCNAB_core Aldo/ket_red	35
5	56664	KCNAB_core Aldo/ket_red	27
1.1	101488	Aldo/keto reductase - Molecular Function: oxidoreductase activity (GO:0016491)	104
2	118901	Aldo/keto reductase - Molecular Function: oxidoreductase activity (GO:0016491)	26
5	129534	Aldo/keto reductase - Molecular Function: oxidoreductase activity (GO:0016491)	19

*i value: controls inflation, a process to dissipate family clusters. At high i value, genes tend to be separated into different families.
**Annotation: the most common InterPro annotation(s) of the Arabidopsis members in the family.

Preceding Unigenes (1)

Unigene	Build
SGN-U265296	Solanum tuberosum #3

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