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Unigene SGN-U290465

Unigene Basic Information

Unigene ID:	SGN-U290465
Unigene Build:	Solanum tuberosum #4
Date:	2005-05-04
Organism:	S.tuberosum
Alternative ID:	290465
mRNA sequence:	Length: 419 bp

>SGN-U290465 Solanum tuberosum #4 (1 members)
AGAAAAGGAACATTTTTTACAATATCAGTGTGTATCTCGATATCAAAATTTCCACTGTTCCCCGCTCAAAATGATTTCAGTCACAAAAGG
GAACTAAGGTGGGACTCTTAAGAATATCATGGTAGGCTGCGATTCTATTCCCCCAGAATAGAAAAAAAAAATACTCATCTACCTTGCCCC
AAGTAGGGAGGAAAATATATCTGATCTAAGGAATGTAGTATTTTAGAACATAACAGCAAGCTCCTTCTCAGTCATCTCAAACACATGGTC
TCTTGCATCTGTGAGAGCTGTCTGTCCTAATTTGGTGAGGAAGTTACTGGCAAGATTTAAAGATGTGAGTCTAACATCTTCATTTGCCTT
GAGTGCTTGAGCGATAGCAAAAGCTCCTTCATCTCTAATTTCATTGAACCCTAAATTGA

[Blast] [AA Translation]

Associated Loci (0)

None

Genomic locations (0)

None

Library representation (1)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Solanum tuberosum	STM	mixed tissues	14805	1

mRNA member sequences (1)

Alignment image suppressed for unigene with only one aligned EST SGN-E418702
[Show Image]

Markers Information (0)

Unigene Mapped Marker Information

No member sequence or clone is mapped.

COSII Markers Information

None cosii markers associated to this unigene.

Expression Data (0)

No expression data was found associated to this unigene

Annotations (manual: 0 | blast: 2 | go: 0 )

Manual annotations

None manual annotation was found for this unigene

Blast Annotations [Show All]

Database	Program	Best Match	Score	E-value	Identity	Alignment Length	Frame
genbank	blastx	gi\|258678027\|gb\|ACV87735.1\|	122	1e-26	95.31	192 bp (45.8%)	-2
Description:	chloroplast envelope protein 1 [Nicotiana benthamiana]
arabidopsis	blastx	At1G10510.1	104	2e-23	76.56	192 bp (45.8%)	-2
Description:	Symbols: EMB2004 \| EMB2004 (EMBRYO DEFECTIVE 2004); protein binding \| chr1:3461772-3465591 FORWARD
swissprot	blastx	No significant hits ( or none blast was used over this dataset )

GO Terms Annotations

No Gene Ontology annotation

Protein prediction analysis (2)

Prediction based on ESTScan [ Show ESTScan Detail]

>SGN-P100602 (64 Aa)

NLGFNEIRDEGAFAIAQALKANEDVRLTSLNLASNFLTKLGQTALTDARDHVFEMTEKELAVMF

SignalP predicts non-secretion with a score of 0.041

No InterPro domain matches or not analyzed.

Prediction based on longest six frame method

>SGN-P232596 (64 Aa)

NLGFNEIRDEGAFAIAQALKANEDVRLTSLNLASNFLTKLGQTALTDARDHVFEMTEKELAVMF

SignalP predicts non-secretion with a score of 0.041

No InterPro domain matches or not analyzed.

Gene Family (6)

Family Build (I value*)	Family ID	Annotation**	# Members
1.2	402	LRR LRR_RNinh	43
2	24298	Tropomodulin LPP LRR LRR_RNinh	9
5	58344	Tropomodulin LPP LRR LRR_RNinh	9
1.1	101721	Leucine-rich repeat ribonuclease inhibitor type	43
2	120284	Leucine-rich repeat Leucine-rich repeat ribonuclease inhibitor type	9
5	130819	Leucine-rich repeat Leucine-rich repeat ribonuclease inhibitor type	8

*i value: controls inflation, a process to dissipate family clusters. At high i value, genes tend to be separated into different families.
**Annotation: the most common InterPro annotation(s) of the Arabidopsis members in the family.

Preceding Unigenes (1)

Unigene	Build
SGN-U267786	Solanum tuberosum #3

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