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Unigene SGN-U290576

Unigene Basic Information

Unigene ID:	SGN-U290576
Unigene Build:	Solanum tuberosum #4
Date:	2005-05-04
Organism:	S.tuberosum
Alternative ID:	290576
mRNA sequence:	Length: 315 bp

>SGN-U290576 Solanum tuberosum #4 (1 members)
TGAAAAGAATGTTTGGCCAGCAATTGCAGCAGGCAAGGTGAAACCAGTGGTGTACAAGTACTTCCCCTTAGCAGAAGCTGCTGAGGCTCA
CCAGTTAATGGAAAGCAGCAAGCACATTGGAAAGATTCTGCTTACTGTTTAAATGTTGTAAAAGAGAGATTTTCTTGTTCCTAGTGTTAA
AATTGCCTGTACTCCCAGCCAGTCANACCCCCAAACCTCTGCTGCATGTATTATACTTTGCAAAGTTCCAATAAAACAAAACCTTTTTAT
GATTTTTTTTCATTTTTTTGTTTGCGTAAAATAAACAAAAAAAAA

[Blast] [AA Translation]

Associated Loci (1)

Locus symbol	Locus name	Gene activity
DQ191658	NADPH quinone oxidoreductase

Genomic locations (0)

None

Library representation (1)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Solanum tuberosum	MXLF	Leaves	6585	1

mRNA member sequences (1)

Alignment image suppressed for unigene with only one aligned EST SGN-E614390
[Show Image]

Markers Information (0)

Unigene Mapped Marker Information

No member sequence or clone is mapped.

COSII Markers Information

None cosii markers associated to this unigene.

Expression Data (0)

No expression data was found associated to this unigene

Annotations (manual: 0 | blast: 2 | go: 0 )

Manual annotations

None manual annotation was found for this unigene

Blast Annotations [Show All]

Database	Program	Best Match	Score	E-value	Identity	Alignment Length	Frame
genbank	blastx	gi\|76160992\|gb\|ABA40459.1\|	92.4	2e-17	95.65	138 bp (43.8%)	3
Description:	NADPH quinone oxidoreductase-like protein [Solanum tuberosum]
arabidopsis	blastx	At4G21580.3	79.3	5e-16	81.82	132 bp (41.9%)	3
Description:	oxidoreductase, zinc-binding dehydrogenase family protein \| chr4:11475834-11477526 FORWARD
swissprot	blastx	No significant hits ( or none blast was used over this dataset )

GO Terms Annotations

No Gene Ontology annotation

Protein prediction analysis (2)

Prediction based on longest six frame method

>SGN-P232713 (51 Aa)

WKAASTLERFCLLFKCCKREIFLFLVLKLPVLPASXTPKPLLHVLYFAKFQ

SignalP predicts secretion with a score of 0.448

No InterPro domain matches or not analyzed.

Prediction based on ESTScan [ Show ESTScan Detail]

>SGN-P100709 (46 Aa)

EKNVWPAIAAGKVKPVVYKYFPLAEAAEAHQLMESSKHIGKILLTV

SignalP predicts non-secretion with a score of 0.126

No InterPro domain matches or not analyzed.

Gene Family (6)

Family Build (I value*)	Family ID	Annotation**	# Members
1.2	5159		2
2	29712		2
5	59382	Tdh Adh_zn_family BchB	6
1.1	101421	GroES-like Alcohol dehydrogenase superfamily zinc-containing - Molecular Function: zinc ion binding (GO:0008270) - Molecular Function: oxidoreductase activity (GO:0016491)	210
2	120043	Alcohol dehydrogenase GroES-like Alcohol dehydrogenase superfamily zinc-containing - Molecular Function: zinc ion binding (GO:0008270) - Molecular Function: oxidoreductase activity (GO:0016491) Alcohol dehydrogenase zinc-binding GroES-like	11
5	132775	Alcohol dehydrogenase GroES-like Alcohol dehydrogenase superfamily zinc-containing - Molecular Function: zinc ion binding (GO:0008270) - Molecular Function: oxidoreductase activity (GO:0016491) Alcohol dehydrogenase zinc-binding GroES-like	5

*i value: controls inflation, a process to dissipate family clusters. At high i value, genes tend to be separated into different families.
**Annotation: the most common InterPro annotation(s) of the Arabidopsis members in the family.

Preceding Unigenes (0)

None

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