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Unigene SGN-U291429

Unigene Basic Information

Unigene ID:	SGN-U291429
Unigene Build:	Solanum tuberosum #4
Date:	2005-05-04
Organism:	S.tuberosum
Alternative ID:	291429
mRNA sequence:	Length: 330 bp

>SGN-U291429 Solanum tuberosum #4 (1 members)
CGAGGGAAGTTATCGATCACCTTAAAAAAGAGTATCCTTACCCTGCTATAGAGAGGCAAGATCATGATTCAGTAATCCCCTCAGAGATTT
CATCAAAGAAATTGAGAGCTCTGGGATTTTCTTTCAAGTATGAAATCAATGATATCGTACGAGATACAATTAGTAGTTGTATACATCATG
GCTTCTTTGCCTCTATTCAAAAGTAAGAATTCCAATTACATGTAGGTAAACGAATACCTTTCTCAGTTGGAAACGGATTTTTCAACTTTT
ATTGTTCTCTGTAAAAATCCCTTTGTGAGTTGGAAACGGATTTTTCAACTTGTTCATAAA

[Blast] [AA Translation]

Associated Loci (0)

None

Genomic locations (0)

None

Library representation (1)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Solanum tuberosum	TUBS	Tubers	5976	1

mRNA member sequences (1)

Alignment image suppressed for unigene with only one aligned EST SGN-E605302
[Show Image]

Markers Information (0)

Unigene Mapped Marker Information

No member sequence or clone is mapped.

COSII Markers Information

None cosii markers associated to this unigene.

Expression Data (0)

No expression data was found associated to this unigene

Annotations (manual: 0 | blast: 1 | go: 0 )

Manual annotations

None manual annotation was found for this unigene

Blast Annotations [Show All]

Database	Program	Best Match	Score	E-value	Identity	Alignment Length	Frame
genbank	blastx	gi\|255563631\|ref\|XP_002522817.1\|	75.5	2e-12	54.41	198 bp (60.0%)	1
Description:	cinnamoyl-CoA reductase, putative [Ricinus communis] >gi223537901\|gb\|EEF39515.1\| cinnamoyl-CoA …
arabidopsis	blastx	No significant hits ( or none blast was used over this dataset )

swissprot	blastx	No significant hits ( or none blast was used over this dataset )

GO Terms Annotations

No Gene Ontology annotation

Protein prediction analysis (2)

Prediction based on longest six frame method

>SGN-P233589 (67 Aa)

REVIDHLKKEYPYPAIERQDHDSVIPSEISSKKLRALGFSFKYEINDIVRDTISSCIHHGFFASIQK

SignalP predicts non-secretion with a score of 0.018

No InterPro domain matches or not analyzed.

Prediction based on ESTScan [ Show ESTScan Detail]

>SGN-P89774 (67 Aa)

REVIDHLKKEYPYPAIERQDHDSVIPSEISSKKLRALGFSFKYEINDIVRDTISSCIHHGFFASIQK

SignalP predicts non-secretion with a score of 0.018

No InterPro domain matches or not analyzed.

Gene Family (6)

Family Build (I value*)	Family ID	Annotation**	# Members
1.2	65	3Beta_HSD	184
2	30408		2
5	65267		2
1.1	101435	NAD-dependent epimerase/dehydratase - Molecular Function: catalytic activity (GO:0003824) - Biological Process: nucleotide-sugar metabolism (GO:0009225) - Molecular Function: NAD binding (GO:0051287)	166
2	128227		2
5	139911		2

*i value: controls inflation, a process to dissipate family clusters. At high i value, genes tend to be separated into different families.
**Annotation: the most common InterPro annotation(s) of the Arabidopsis members in the family.

Preceding Unigenes (0)

None

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