Sol Genomics Network

Unigene SGN-U291615

Unigene Basic Information

Unigene ID:	SGN-U291615
Unigene Build:	Solanum tuberosum #4
Date:	2005-05-04
Organism:	S.tuberosum
Alternative ID:	291615
mRNA sequence:	Length: 570 bp

>SGN-U291615 Solanum tuberosum #4 (1 members)
GCTATCTTAACCTGAAGTCAAAGCATCCAGATGCTGCTGTTCCTCCACTTGATGAAACCCTCAGAAAGATAACAGAACCTGATGTTGAGC
TTCTTTCTCGAAACAAGTCCATCATAGAGGAACTCCGTAGGTCTTTTGAACTAAAAGATAATCCAAAGCTGAAAAAATCAGCAAGAAGAA
TAAAAGAGAGACCTTCAGGATCAGATGAGGAAAGAGGAGAGTTCGACAAAGATGCTGATGTCAAAGCTATAGACTCAATGGAATACTCAC
CCAAAACAGAAGTTGAGAAAGTTGGAGACGTTAATCCTGTCAAAGACTTTGAGGAGATGATGTCTCGAAGAGATAATCCAAAATGGATTA
GTAAGGCCATTCAGGGTATGAAAAATAAGATCTTTGATCTTGTGGAGAATTCTTGTGAAGGAGATACATTTCATAAAGCATTGCAATGTT
TAGTGGCTCTACGCAAAGGTTGCATCCTTGAGCAGGAACCAAAGCAGTTCAATGATTTCCTTGTTGCGCACTGTCTAAAATTTTGCCAAG
AAAAAGAGCTGAGAAGTTTCTGTCTATATC

[Blast] [AA Translation]

Associated Loci (0)

None

Genomic locations (0)

None

Library representation (1)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Solanum tuberosum	TUBS	Tubers	5976	1

mRNA member sequences (1)

Alignment image suppressed for unigene with only one aligned EST SGN-E608765
[Show Image]

Markers Information (0)

Expression Data (0)

Annotations (manual: 0 | blast: 3 | go: 0 )

Protein prediction analysis (2)

Gene Family (6)

Family Build (I value*)	Family ID	Annotation**	# Members
1.2	2498	Ku_N Ku Ku_C Ku70	7
2	28031		3
5	62225		3
1.1	104199	Ku70/Ku80 N-terminal alpha/beta Ku - Molecular Function: DNA binding (GO:0003677) - Molecular Function: ATP-dependent DNA helicase activity (GO:0004003) - Biological Process: double-strand break repair via nonhomologous end-joining (GO:0006303) Ku70/Ku80 C-terminal arm Ku80 antigen - Molecular Function: DNA binding (GO:0003677) - Molecular Function: ATP-dependent DNA helicase activity (GO:0004003) - Cellular Component: nucleus (GO:0005634) - Cellular Component: DNA-dependent protein kinase complex (GO:0005958) - Biological Process: double-strand break repair via nonhomologous end-joining (GO:0006303) - Biological Process: DNA recombination (GO:0006310)	4
2	123090	Ku80 antigen - Molecular Function: DNA binding (GO:0003677) - Molecular Function: ATP-dependent DNA helicase activity (GO:0004003) - Cellular Component: nucleus (GO:0005634) - Cellular Component: DNA-dependent protein kinase complex (GO:0005958) - Biological Process: double-strand break repair via nonhomologous end-joining (GO:0006303) - Biological Process: DNA recombination (GO:0006310) Ku70/Ku80 N-terminal alpha/beta Ku - Molecular Function: DNA binding (GO:0003677) - Molecular Function: ATP-dependent DNA helicase activity (GO:0004003) - Biological Process: double-strand break repair via nonhomologous end-joining (GO:0006303) Ku70/Ku80 C-terminal arm	4
5	133283	Ku80 antigen - Molecular Function: DNA binding (GO:0003677) - Molecular Function: ATP-dependent DNA helicase activity (GO:0004003) - Cellular Component: nucleus (GO:0005634) - Cellular Component: DNA-dependent protein kinase complex (GO:0005958) - Biological Process: double-strand break repair via nonhomologous end-joining (GO:0006303) - Biological Process: DNA recombination (GO:0006310) Ku70/Ku80 N-terminal alpha/beta Ku - Molecular Function: DNA binding (GO:0003677) - Molecular Function: ATP-dependent DNA helicase activity (GO:0004003) - Biological Process: double-strand break repair via nonhomologous end-joining (GO:0006303) Ku70/Ku80 C-terminal arm	4

*i value: controls inflation, a process to dissipate family clusters. At high i value, genes tend to be separated into different families.
**Annotation: the most common InterPro annotation(s) of the Arabidopsis members in the family.

Preceding Unigenes (0)

None

Accessions	Seedlots
Accessions		Breeding Program	Seedlot Name	Contents	Seedlot Location	Count	Weight(g)

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