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Unigene SGN-U291616

Unigene Basic Information

Unigene ID:	SGN-U291616
Unigene Build:	Solanum tuberosum #4
Date:	2005-05-04
Organism:	S.tuberosum
Alternative ID:	291616
mRNA sequence:	Length: 405 bp

>SGN-U291616 Solanum tuberosum #4 (1 members)
AAGAAGCAAATGGGTGGACTTTTCACCTGCTGAAAATGGAGGGGTTTGTCAGCTTCAGATTCTTGGTGGGGGCAATTTTTTTGGGGATTT
TTGTGAGAACTGGATGCTCTCTATAGAATGCTGCTGATTCAGCTACTGCAGTGTATATTGTGACCCTGAAAAAAGCTCATTTTAATGAAG
AACTCAACTTGAAGAATCAATACCACTCAAGAAATGGTGGGTCACAGAGAGTTGATAGATTTGACAAACCAAGCAATATTTCACATATAG
ATCGCATGAATGGTTCCTACGTTTCTCAAATGCATGATTCCTTATTGAGGAGGGTGTTAAGAGGAGAAAAGTATCTAAAAGTATACAGCT
ACCACTACTTGATCAATGGATTTGCTGTGCTTGTAACACCCCAGC

[Blast] [AA Translation]

Associated Loci (0)

None

Genomic locations (0)

None

Library representation (1)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Solanum tuberosum	cSTA	Axillary buds of stemp explants; swelling stolons; growing stolons; growing sink-tubers 1 to 3 days (plates 1-20), 4 to 6 days (plates 21-40), 7 to 10 days (plates 41-60)	10537	1

mRNA member sequences (1)

Alignment image suppressed for unigene with only one aligned EST SGN-E444523
[Show Image]

Markers Information (0)

Unigene Mapped Marker Information

No member sequence or clone is mapped.

COSII Markers Information

None cosii markers associated to this unigene.

Expression Data (0)

No expression data was found associated to this unigene

Annotations (manual: 0 | blast: 2 | go: 0 )

Manual annotations

None manual annotation was found for this unigene

Blast Annotations [Show All]

Database	Program	Best Match	Score	E-value	Identity	Alignment Length	Frame
genbank	blastx	gi\|255578037\|ref\|XP_002529889.1\|	104	3e-21	53.51	324 bp (80.0%)	1
Description:	peptidase, putative [Ricinus communis] >gi223530616\|gb\|EEF32492.1\| peptidase, putative [Ricinus…
arabidopsis	blastx	At4G20430.1	75.5	1e-14	46.08	279 bp (68.9%)	1
Description:	subtilase family protein \| chr4:11017667-11021116 REVERSE
swissprot	blastx	No significant hits ( or none blast was used over this dataset )

GO Terms Annotations

No Gene Ontology annotation

Protein prediction analysis (2)

Prediction based on longest six frame method

>SGN-P233782 (96 Aa)

NAADSATAVYIVTLKKAHFNEELNLKNQYHSRNGGSQRVDRFDKPSNISHIDRMNGSYVSQMHDSLLRRVLRGEKYLKVYSYHYLINGFA
VLVTPQ

SignalP predicts non-secretion with a score of 0.176

No InterPro domain matches or not analyzed.

Prediction based on ESTScan [ Show ESTScan Detail]

>SGN-P89947 (135 Aa)

RSKWVDFSPAENGGVCQLQILGGGNFFGDFCENWMLSKNAADSATAVYIVTLKKAHFNEELNLKNQYHSRNGGSQRVDRFDKPSNISHID
RMNGSYVSQMHDSLLRRVLRGEKYLKVYSYHYLINGFAVLVTPQX

SignalP predicts non-secretion with a score of 0.061

No InterPro domain matches or not analyzed.

Gene Family (6)

Family Build (I value*)	Family ID	Annotation**	# Members
1.2	48	Pept_S8_S53	236
2	31479		2
5	66888		2
1.1	101418	Peptidase S8 and S53 subtilisin kexin sedolisin - Molecular Function: subtilase activity (GO:0004289) - Biological Process: proteolysis (GO:0006508)	221
2	128238		2
5	139930		2

*i value: controls inflation, a process to dissipate family clusters. At high i value, genes tend to be separated into different families.
**Annotation: the most common InterPro annotation(s) of the Arabidopsis members in the family.

Preceding Unigenes (1)

Unigene	Build
SGN-U266217	Solanum tuberosum #3

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