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Unigene SGN-U291651

Unigene Basic Information

Unigene ID:	SGN-U291651
Unigene Build:	Solanum tuberosum #4
Date:	2005-05-04
Organism:	S.tuberosum
Alternative ID:	291651
mRNA sequence:	Length: 459 bp

>SGN-U291651 Solanum tuberosum #4 (1 members)
AAAAAGCACAGTTTAGCTAAAACAATAAAACAGCAAATTGATGCTGGCCAATTTGGAGCTGCAACAGAGTCATGGGGTAAACTAGAAACC
ATCATAAGTGAAAGCAGTAATTCAGTGGATTTCTACAATTTCATGTTGGATTCTGGAATGGATCCTTTAGCTTTAACATCTTCTGAATTA
TCACAATCAATTGGAATGAAGAGATATTCAAGATATTTACAATTATCTAGAATTACTCCTGGTAGTGATGCTGATCTTGATAATTTAATG
AATGGTGTTATAAGAAAAAAATTGAAAATTATTCCAAAAAATGTTAGTTGGGGAGGACAGGCTGATCTTGTGTTTGATGCTCTAAATGAT
GATTTTATGAAACCAAGAATCAATGAGGTTGATGAATTATTGGCCAAAGGAGTGAATGTGACTGTGTATAATGGGCAACTTGATCTCATT
TGTGCCACT

[Blast] [AA Translation]

Associated Loci (0)

None

Genomic locations (0)

None

Library representation (1)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Solanum tuberosum	cSTB	leaves and petioles 8 weeks old plants	10327	1

mRNA member sequences (1)

Alignment image suppressed for unigene with only one aligned EST SGN-E470057
[Show Image]

Markers Information (0)

Unigene Mapped Marker Information

No member sequence or clone is mapped.

COSII Markers Information

None cosii markers associated to this unigene.

Expression Data (0)

No expression data was found associated to this unigene

Annotations (manual: 0 | blast: 3 | go: 0 )

Manual annotations

None manual annotation was found for this unigene

Blast Annotations [Show All]

Database	Program	Best Match	Score	E-value	Identity	Alignment Length	Frame
genbank	blastx	gi\|255565509\|ref\|XP_002523745.1\|	217	3e-55	70.13	459 bp (100.0%)	2
Description:	retinoid-inducible serine carboxypeptidase, putative [Ricinus communis] >gi223537049\|gb\|EEF3868…
arabidopsis	blastx	At2G27920.3	164	3e-41	54.84	453 bp (98.7%)	2
Description:	Symbols: SCPL51 \| SCPL51; serine carboxypeptidase \| chr2:11892854-11895809 REVERSE
swissprot	blastx	Q67Y83	164	3e-40	54.84	453 bp (98.7%)	2
Description:	Serine carboxypeptidase-like 51 OS=Arabidopsis thaliana GN=SCPL51 PE=2 SV=2

GO Terms Annotations

No Gene Ontology annotation

Protein prediction analysis (2)

Prediction based on ESTScan [ Show ESTScan Detail]

>SGN-P89981 (153 Aa)

KKHSLAKTIKQQIDAGQFGAATESWGKLETIISESSNSVDFYNFMLDSGMDPLALTSSELSQSIGMKRYSRYLQLSRITPGSDADLDNLM
NGVIRKKLKIIPKNVSWGGQADLVFDALNDDFMKPRINEVDELLAKGVNVTVYNGQLDLICAT

SignalP predicts non-secretion with a score of 0.046

No InterPro domain matches or not analyzed.

Prediction based on longest six frame method

>SGN-P233817 (153 Aa)

KKHSLAKTIKQQIDAGQFGAATESWGKLETIISESSNSVDFYNFMLDSGMDPLALTSSELSQSIGMKRYSRYLQLSRITPGSDADLDNLM
NGVIRKKLKIIPKNVSWGGQADLVFDALNDDFMKPRINEVDELLAKGVNVTVYNGQLDLICAT

SignalP predicts non-secretion with a score of 0.046

No InterPro domain matches or not analyzed.

Gene Family (6)

Family Build (I value*)	Family ID	Annotation**	# Members
1.2	54	Peptidase_S10	225
2	27552	Peptidase_S10 M_repeat Ribosomal_L29 Cons_hypoth255	4
5	61723	Peptidase_S10 M_repeat Ribosomal_L29 Cons_hypoth255	4
1.1	101427	Peptidase S10 serine carboxypeptidase - Molecular Function: serine carboxypeptidase activity (GO:0004185) - Biological Process: proteolysis (GO:0006508)	193
2	118433	Peptidase S10 serine carboxypeptidase - Molecular Function: serine carboxypeptidase activity (GO:0004185) - Biological Process: proteolysis (GO:0006508)	192
5	134855	Peptidase S10 serine carboxypeptidase - Molecular Function: serine carboxypeptidase activity (GO:0004185) - Biological Process: proteolysis (GO:0006508) Esterase/lipase/thioesterase - Molecular Function: catalytic activity (GO:0003824)	3

*i value: controls inflation, a process to dissipate family clusters. At high i value, genes tend to be separated into different families.
**Annotation: the most common InterPro annotation(s) of the Arabidopsis members in the family.

Preceding Unigenes (1)

Unigene	Build
SGN-U264177	Solanum tuberosum #3

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