Sol Genomics Network

Unigene SGN-U292456

Unigene Basic Information

Unigene ID:	SGN-U292456
Unigene Build:	Solanum tuberosum #4
Date:	2005-05-04
Organism:	S.tuberosum
Alternative ID:	292456
mRNA sequence:	Length: 521 bp

>SGN-U292456 Solanum tuberosum #4 (1 members)
CGAGGCTATAACCCTCATGCCTACCACAACCTGAGTGGGAGAAGTGGTGGAAGAATCCAGAGAATGTGGAGCTCTATCAGTTTATGGGCA
AAGATAATGTGCCTTTTCACACCTGTGATTTTCCCATCTACGCTTCTTGGAACCTCGTGAAAACTGGACTCTTATGAAGACTATTAGTGT
AACAGAATACTTGAACTATGAAGCAGGCAAATTCTCAAAGAGCAAGGGCGTAGGAGTATTTGGTAATGACGCAAAAGAGACGAACATTCC
TGTAGAAGTTTGGAGATATTACTTGCTGACAAACAGGCCAGAGGTGTCAGACACTTTGTTTAGTTGGGTGGATTTACAAGCAAAGTTAAA
CAGCGAGTTGCTAAACAACTTAGGCAATTTCGTCAATAGAGTCCTGAGTTTCATTGCAAAAGATCCGGCTTCAGGTTATGGTTCCATAAT
TCCCAACCCTGAAGGAGCTGAATCACACCCTTTAACTAAGGCCTTANGTGAAAAAGTTGGAAATTATGTGG

[Blast] [AA Translation]

Associated Loci (0)

None

Genomic locations (0)

None

Library representation (1)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Solanum tuberosum	cSTA	Axillary buds of stemp explants; swelling stolons; growing stolons; growing sink-tubers 1 to 3 days (plates 1-20), 4 to 6 days (plates 21-40), 7 to 10 days (plates 41-60)	10537	1

mRNA member sequences (1)

Alignment image suppressed for unigene with only one aligned EST SGN-E437357
[Show Image]

Markers Information (0)

Expression Data (0)

Annotations (manual: 0 | blast: 3 | go: 0 )

Protein prediction analysis (2)

Gene Family (6)

Family Build (I value*)	Family ID	Annotation**	# Members
1.2	795	PheT_bact tRNA_bind MetG_Cterm	24
2	23422	PheT_bact tRNA_bind MetG_Cterm	13
5	59077	tRNA-synt_val tRNA-synt_I PheT_bact tRNA_bind HAT tRNA-synt_1a tRNA-synt_ile MetG_Cterm tRNA-synt_met	7
1.1	102108	Nucleic acid-binding OB-fold subgroup Nucleic acid-binding OB-fold - Molecular Function: nucleic acid binding (GO:0003676) t-RNA-binding region - Molecular Function: tRNA binding (GO:0000049)	22
2	120034	t-RNA-binding region - Molecular Function: tRNA binding (GO:0000049) Nucleic acid-binding OB-fold - Molecular Function: nucleic acid binding (GO:0003676) Nucleic acid-binding OB-fold subgroup	11
5	131453	t-RNA-binding region - Molecular Function: tRNA binding (GO:0000049) Aminoacyl-tRNA synthetase class I - Molecular Function: aminoacyl-tRNA ligase activity (GO:0004812) - Molecular Function: ATP binding (GO:0005524) - Biological Process: tRNA aminoacylation for protein translation (GO:0006418) Aminoacyl-tRNA synthetase class 1a anticodon-binding Methionyl-tRNA synthetase class Ia - Molecular Function: methionine-tRNA ligase activity (GO:0004825) - Molecular Function: ATP binding (GO:0005524) - Biological Process: methionyl-tRNA aminoacylation (GO:0006431) Methionyl-tRNA synthetase dimer-forming - Molecular Function: tRNA binding (GO:0000049) - Molecular Function: methionine-tRNA ligase activity (GO:0004825) - Molecular Function: ATP binding (GO:0005524) - Biological Process: protein biosynthesis (GO:0006412) Nucleic acid-binding OB-fold - Molecular Function: nucleic acid binding (GO:0003676) Nucleic acid-binding OB-fold subgroup	7

Preceding Unigenes (1)

Unigene	Build
SGN-U267953	Solanum tuberosum #3

Accessions	Seedlots
Accessions		Breeding Program	Seedlot Name	Contents	Seedlot Location	Count	Weight(g)

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