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Unigene SGN-U293205

Unigene Basic Information

Unigene ID:	SGN-U293205
Unigene Build:	Solanum tuberosum #4
Date:	2005-05-04
Organism:	S.tuberosum
Alternative ID:	293205
mRNA sequence:	Length: 453 bp

>SGN-U293205 Solanum tuberosum #4 (1 members)
CACTAATGCACGAAAACTCTGTTGCCGCCTCCGTCGCCAATTCCTCCACCGCCGCCGGTGTGCCCGCCGTGGTCAACAACTCACACCTTC
CACCACAACCATTACCGAGACGTGTTGTGTTCCGACTTCTCTGCCATGCTTCACGCGTCGGTGGGGTTATCGGAAAATCAGGGTCCATTA
TTAGACAACTTCAACAAGACACCTCCGCTAAGATTCACGTTGATGTGTCCGCACCAAACGACCACAACCGACTCATTGTTGTAGTAGCCC
CTGCTTCAGTAAACAAGAGGATAAGGCTATTGGGCCCCATTGGGGATAACCAGCGGAATGAAGAAATTGATGAAATAGAGGTTTCGGCTG
CACAAGAAGCACTTGTTAGGGTTTTTGAGAGAGTGATAGAAGTAACAGCGGAAAATAATGGACTAGTTTTGGGTGTGGAGAATGTTGTGT
CGT

[Blast] [AA Translation]

Associated Loci (0)

None

Genomic locations (0)

None

Library representation (1)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Solanum tuberosum	cSTA	Axillary buds of stemp explants; swelling stolons; growing stolons; growing sink-tubers 1 to 3 days (plates 1-20), 4 to 6 days (plates 21-40), 7 to 10 days (plates 41-60)	10537	1

mRNA member sequences (1)

Alignment image suppressed for unigene with only one aligned EST SGN-E443628
[Show Image]

Markers Information (0)

Unigene Mapped Marker Information

No member sequence or clone is mapped.

COSII Markers Information

None cosii markers associated to this unigene.

Expression Data (0)

No expression data was found associated to this unigene

Annotations (manual: 0 | blast: 1 | go: 0 )

Manual annotations

None manual annotation was found for this unigene

Blast Annotations [Show All]

Database	Program	Best Match	Score	E-value	Identity	Alignment Length	Frame
genbank	blastx	gi\|225464083\|ref\|XP_002269250.1\|	85.9	1e-15	56.48	321 bp (70.9%)	1
Description:	PREDICTED: hypothetical protein [Vitis vinifera]
arabidopsis	blastx	No significant hits ( or none blast was used over this dataset )

swissprot	blastx	No significant hits ( or none blast was used over this dataset )

GO Terms Annotations

No Gene Ontology annotation

Protein prediction analysis (2)

Prediction based on longest six frame method

>SGN-P235405 (150 Aa)

LMHENSVAASVANSSTAAGVPAVVNNSHLPPQPLPRRVVFRLLCHASRVGGVIGKSGSIIRQLQQDTSAKIHVDVSAPNDHNRLIVVVAP
ASVNKRIRLLGPIGDNQRNEEIDEIEVSAAQEALVRVFERVIEVTAENNGLVLGVENVVS

SignalP predicts non-secretion with a score of 0.089

No InterPro domain matches or not analyzed.

Prediction based on ESTScan [ Show ESTScan Detail]

>SGN-P91439 (151 Aa)

LMHENSVAASVANSSTAAGVPAVVNNSHLPPQPLPRRVVFRLLCHASRVGGVIGKSGSIIRQLQQDTSAKIHVDVSAPNDHNRLIVVVAP
ASVNKRIRLLGPIGDNQRNEEIDEIEVSAAQEALVRVFERVIEVTAENNGLVLGVENVVSX

SignalP predicts non-secretion with a score of 0.089

No InterPro domain matches or not analyzed.

Gene Family (6)

Family Build (I value*)	Family ID	Annotation**	# Members
1.2	77	KH_type_1 KH	159
2	22164	KH_type_1 KH	51
5	66799		2
1.1	101431	KH - Molecular Function: nucleic acid binding (GO:0003676) KH type 1 - Molecular Function: nucleic acid binding (GO:0003676)	188
2	118711	KH type 1 - Molecular Function: nucleic acid binding (GO:0003676) KH - Molecular Function: nucleic acid binding (GO:0003676)	34
5	140042		2

*i value: controls inflation, a process to dissipate family clusters. At high i value, genes tend to be separated into different families.
**Annotation: the most common InterPro annotation(s) of the Arabidopsis members in the family.

Preceding Unigenes (1)

Unigene	Build
SGN-U264455	Solanum tuberosum #3

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