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Unigene SGN-U293935

Unigene Basic Information

Unigene ID:	SGN-U293935
Unigene Build:	Solanum tuberosum #4
Date:	2005-05-04
Organism:	S.tuberosum
Alternative ID:	293935
mRNA sequence:	Length: 458 bp

>SGN-U293935 Solanum tuberosum #4 (1 members)
GTAATGTTGCTAAGTATTTCCCAACAACAATCATCAGTGGGAGAAGACGTGATAAGGTTTATGAGCTGGTAGGTCTAACGGAACTCTATT
ATGCCGGAAGTCATGGTATGGACATTATGCTGCCAATCAAGAATACGTTGTCTGCTAACGATTCAAATTGTATCAAAGATACTGACCAGC
AGGGCAAGGAAGTCAATCTGTTCCAGCCTGCTCGTAAATTTTTATCAATGATTGATGAGGTTTTTAAAACCCTTGTCGAGAAAACTAAAG
ACATTAAGGGTGCAAAAGTTGAGCACCATAAGTTTTGTGCCTCTGTACATTACCGTAATGTAGATGAGAATAATTGGTCTCTCATTGCAC
AATATGTCCATGATGTCTTGAAAGACTACCCTCAGCTACGGCTAACTCATGGGCGAAAGGTTTTAGAGGTCCGTCCTGATATTGACTGGG
ACAAAGGA

[Blast] [AA Translation]

Associated Loci (0)

None

Genomic locations (0)

None

Library representation (1)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Solanum tuberosum	cSTB	leaves and petioles 8 weeks old plants	10327	1

mRNA member sequences (1)

Alignment image suppressed for unigene with only one aligned EST SGN-E471027
[Show Image]

Markers Information (0)

Unigene Mapped Marker Information

No member sequence or clone is mapped.

COSII Markers Information

None cosii markers associated to this unigene.

Expression Data (0)

No expression data was found associated to this unigene

Annotations (manual: 0 | blast: 3 | go: 0 )

Manual annotations

None manual annotation was found for this unigene

Blast Annotations [Show All]

Database	Program	Best Match	Score	E-value	Identity	Alignment Length	Frame
genbank	blastx	gi\|255583646\|ref\|XP_002532578.1\|	252	9e-66	78.95	456 bp (99.6%)	1
Description:	trehalose-6-phosphate synthase, putative [Ricinus communis] >gi223527705\|gb\|EEF29812.1\| trehalo…
arabidopsis	blastx	At4G12430.1	239	4e-64	76.97	456 bp (99.6%)	1
Description:	trehalose-6-phosphate phosphatase, putative \| chr4:7365477-7367343 REVERSE
swissprot	blastx	A0PMI0	77.4	3e-14	33.11	453 bp (98.9%)	1
Description:	Trehalose-phosphate phosphatase OS=Mycobacterium ulcerans (strain Agy99) GN=otsB PE=3 SV=1

GO Terms Annotations

No Gene Ontology annotation

Protein prediction analysis (2)

Prediction based on longest six frame method

>SGN-P236154 (152 Aa)

NVAKYFPTTIISGRRRDKVYELVGLTELYYAGSHGMDIMLPIKNTLSANDSNCIKDTDQQGKEVNLFQPARKFLSMIDEVFKTLVEKTKD
IKGAKVEHHKFCASVHYRNVDENNWSLIAQYVHDVLKDYPQLRLTHGRKVLEVRPDIDWDKG

SignalP predicts non-secretion with a score of 0.107

No InterPro domain matches or not analyzed.

Prediction based on ESTScan [ Show ESTScan Detail]

>SGN-P92116 (152 Aa)

NVAKYFPTTIISGRRRDKVYELVGLTELYYAGSHGMDIMLPIKNTLSANDSNCIKDTDQQGKEVNLFQPARKFLSMIDEVFKTLVEKTKD
IKGAKVEHHKFCASVHYRNVDENNWSLIAQYVHDVLKDYPQLRLTHGRKVLEVRPDIDWDKG

SignalP predicts non-secretion with a score of 0.107

No InterPro domain matches or not analyzed.

Gene Family (6)

Family Build (I value*)	Family ID	Annotation**	# Members
1.2	167	Trehalose_PPase	83
2	22565	HAD_SF_IIB SPP_like_arch Suc_phosP Trehalose_PPase	25
5	56747	HAD_SF_IIB SPP_like_arch Suc_phosP Trehalose_PPase	24
1.1	101548	Trehalose-phosphatase - Molecular Function: catalytic activity (GO:0003824) - Biological Process: trehalose biosynthesis (GO:0005992)	77
2	119068	HAD-superfamily hydrolase subfamily IIB - Molecular Function: catalytic activity (GO:0003824) - Biological Process: metabolism (GO:0008152) Trehalose-phosphatase - Molecular Function: catalytic activity (GO:0003824) - Biological Process: trehalose biosynthesis (GO:0005992)	21
5	129475	HAD-superfamily hydrolase subfamily IIB - Molecular Function: catalytic activity (GO:0003824) - Biological Process: metabolism (GO:0008152) Trehalose-phosphatase - Molecular Function: catalytic activity (GO:0003824) - Biological Process: trehalose biosynthesis (GO:0005992)	20

*i value: controls inflation, a process to dissipate family clusters. At high i value, genes tend to be separated into different families.
**Annotation: the most common InterPro annotation(s) of the Arabidopsis members in the family.

Preceding Unigenes (1)

Unigene	Build
SGN-U263795	Solanum tuberosum #3

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