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Unigene SGN-U294904

Unigene Basic Information

Unigene ID:	SGN-U294904
Unigene Build:	Solanum tuberosum #4
Date:	2005-05-04
Organism:	S.tuberosum
Alternative ID:	294904
mRNA sequence:	Length: 333 bp

>SGN-U294904 Solanum tuberosum #4 (1 members)
TATGTTCTTGTATGGTTATTTCGAATGATTTTCCCTTTCACCCCTCGCTTACATATCATTCCTGGTCGCGGGGGATAGATGGTTGGCGAA
TGCAATGACTAGTCACTGGGGTCACGATGAAAAACTCCGCGATGACATCAATGATACAAATGGCCCTGGTAGAGACAGCTATTGGCTCTA
GGGGCAACTCCTATGCAAGACAAGCGAGCTACAACAATGTGAAAAGATCACTTGTTATTGCTCTGTCTCCTGTGTTACGACAATGCAAAA
ACAGTTGGTCTTATATCACTTCCAGGTGCAATGACTGGGCTAATTATGGGAGGAGCCTCTCCT

[Blast] [AA Translation]

Associated Loci (0)

None

Genomic locations (0)

None

Library representation (1)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Solanum tuberosum	MXLF	Leaves	6585	1

mRNA member sequences (1)

Alignment image suppressed for unigene with only one aligned EST SGN-E617435
[Show Image]

Markers Information (0)

Unigene Mapped Marker Information

No member sequence or clone is mapped.

COSII Markers Information

None cosii markers associated to this unigene.

Expression Data (0)

No expression data was found associated to this unigene

Annotations (manual: 0 | blast: 0 | go: 0 )

Manual annotations

None manual annotation was found for this unigene

Blast Annotations [Show All]

Database	Program	Best Match
genbank	blastx	No significant hits ( or none blast was used over this dataset )

arabidopsis	blastx	No significant hits ( or none blast was used over this dataset )

swissprot	blastx	No significant hits ( or none blast was used over this dataset )

GO Terms Annotations

No Gene Ontology annotation

Protein prediction analysis (2)

Prediction based on longest six frame method

>SGN-P237149 (78 Aa)

LVTGVTMKNSAMTSMIQMALVETAIGSRGNSYARQASYNNVKRSLVIALSPVLRQCKNSWSYITSRCNDWANYGRSLS

SignalP predicts non-secretion with a score of 0.239

No InterPro domain matches or not analyzed.

Prediction based on ESTScan [ Show ESTScan Detail]

>SGN-P93010 (80 Aa)

MTSHWGHDEKLRDDINDTNGPGRXQLLALGATPMQDKXSYNNVKRSLVIALSPVYDNAKTVGLISLPGAMTGLIMGGASP

SignalP predicts non-secretion with a score of 0.021

No InterPro domain matches or not analyzed.

Gene Family (5)

Family Build (I value*)	Family ID	Annotation**	# Members
1.2	3762	BPD_transp PC_trans Cons_hypoth245	4
2	27023	BPD_transp PC_trans Cons_hypoth245	4
5	61064	BPD_transp PC_trans Cons_hypoth245	4
1.1	104851	Conserved hypothetical protein 245	3
2	124563	Conserved hypothetical protein 245	3

*i value: controls inflation, a process to dissipate family clusters. At high i value, genes tend to be separated into different families.
**Annotation: the most common InterPro annotation(s) of the Arabidopsis members in the family.

Preceding Unigenes (0)

None

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