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Unigene SGN-U295038

Unigene Basic Information

Unigene ID:	SGN-U295038
Unigene Build:	Solanum tuberosum #4
Date:	2005-05-04
Organism:	S.tuberosum
Alternative ID:	295038
mRNA sequence:	Length: 343 bp

>SGN-U295038 Solanum tuberosum #4 (1 members)
TGGATGCATGCTTTGTTGTTGGACAGGTTCAAGACTGCTGATGCTGTCGATTGGAGGAAATCTGGTGCCACTGTGCTGCCTGACTTGATC
GCTACCAAAGAATGGCTTACCTCTGAAAATTTGAAATGCAGTGACCTGTGAAAGTCCTGTTTGATTATTTTCTTGCCTATAATGGTAGGT
AGATTTGTATTACAAGAATGGTTATGAGTTCTATGAATGTGATGAGGAAACATTTAGTTCAATATGCCAGATGCCGTTGTATCTGCATAA
TATTAGAATGACAAGAAGAAATAACTATATTCATCATGACTTCAATTACACCAAAAGTTGCATAAAAAAAAAA

[Blast] [AA Translation]

Associated Loci (0)

None

Genomic locations (0)

None

Library representation (1)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Solanum tuberosum	MXLF	Leaves	6585	1

mRNA member sequences (1)

Alignment image suppressed for unigene with only one aligned EST SGN-E613312
[Show Image]

Markers Information (0)

Unigene Mapped Marker Information

No member sequence or clone is mapped.

COSII Markers Information

None cosii markers associated to this unigene.

Expression Data (0)

No expression data was found associated to this unigene

Annotations (manual: 0 | blast: 1 | go: 0 )

Manual annotations

None manual annotation was found for this unigene

Blast Annotations [Show All]

Database	Program	Best Match	Score	E-value	Identity	Alignment Length	Frame
genbank	blastx	gi\|255638788\|gb\|ACU19698.1\|	72.4	2e-11	76.19	126 bp (36.7%)	2
Description:	unknown [Glycine max]
arabidopsis	blastx	No significant hits ( or none blast was used over this dataset )

swissprot	blastx	No significant hits ( or none blast was used over this dataset )

GO Terms Annotations

No Gene Ontology annotation

Protein prediction analysis (2)

Prediction based on longest six frame method

>SGN-P237284 (77 Aa)

MFPHHIHRTHNHSCNTNLPTIIGKKIIKQDFHRSLHFKFSEVSHSLVAIKSGSTVAPDFLQSTASAVLNLSNNKACI

SignalP predicts non-secretion with a score of 0.096

No InterPro domain matches or not analyzed.

Prediction based on ESTScan [ Show ESTScan Detail]

>SGN-P93137 (46 Aa)

WMHALLLDRFKTADAVDWRKSGATVLPDLIATKEWLTSENLKCSDL

SignalP predicts non-secretion with a score of 0.299

No InterPro domain matches or not analyzed.

Gene Family (5)

Family Build (I value*)	Family ID	Annotation**	# Members
1.2	1042	HAD-SF-IIIA Hydrolase HAD_SF_A_v1 PGP_bact HAD_II	18
2	25993	HAD-SF-IIIA HAD_SF_IIA_hyp2 Hydrolase HAD_SF_A_v1 PGP_bact HAD_II	5
5	59977	HAD-SF-IIIA HAD_SF_IIA_hyp2 Hydrolase HAD_SF_A_v1 PGP_bact HAD_II	5
1.1	102477	HAD-superfamily hydrolase subfamily IA variant 1 - Biological Process: metabolism (GO:0008152) - Molecular Function: phosphoglycolate phosphatase activity (GO:0008967) Haloacid dehalogenase-like hydrolase - Molecular Function: catalytic activity (GO:0003824) - Biological Process: metabolism (GO:0008152) HAD-superfamily subfamily IA hydrolase REG-2-like	13
2	125063	Haloacid dehalogenase-like hydrolase - Molecular Function: catalytic activity (GO:0003824) - Biological Process: metabolism (GO:0008152) HAD-superfamily subfamily IA hydrolase REG-2-like HAD-superfamily hydrolase subfamily IA variant 1 - Biological Process: metabolism (GO:0008152) - Molecular Function: phosphoglycolate phosphatase activity (GO:0008967)	3

*i value: controls inflation, a process to dissipate family clusters. At high i value, genes tend to be separated into different families.
**Annotation: the most common InterPro annotation(s) of the Arabidopsis members in the family.

Preceding Unigenes (0)

None

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