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Unigene SGN-U295180

Unigene Basic Information

Unigene ID:	SGN-U295180
Unigene Build:	Solanum tuberosum #4
Date:	2005-05-04
Organism:	S.tuberosum
Alternative ID:	295180
mRNA sequence:	Length: 457 bp

>SGN-U295180 Solanum tuberosum #4 (1 members)
TTTCCGATTAACCGGAGGTTGAATGTCGCCGGACTTCCGAACCCTTTTCTTCTCCACTACCGGAAAATTAACGGGTCCATGTTTCCTTCT
TTTCTTTGGCGGAAAATTACAGGTGGTGGGAGAATCGTAGCTGCGGTGGACATGGATAAAGCAGAGAAAAAGACGGGTCCGGTGAGAATA
GTGGGGATTGTTGGAGAGGGTAGTGTTAGCCCTCTCAAGTCTACTCCTTGGCTTGACGTCATGCTTCACACTATAGAGAGACTGAAATGG
GTTGATGAAGAATTTGAAATGATTGTCTTTTCTGACAACTTTGTGAAATCTGAAGATGAAACTGTCAAGCATGTCAGCAATGAGCTGGAT
CGTGCTGACATTTTGGTGGTCGTTGCTGCCAGAAAGGAAGGATCAGTCAACTGGATACAGTCTAACAGCCAGAATGTCCCAAACATCATA
TGCTTTG

[Blast] [AA Translation]

Associated Loci (0)

None

Genomic locations (0)

None

Library representation (1)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Solanum tuberosum	cSTA	Axillary buds of stemp explants; swelling stolons; growing stolons; growing sink-tubers 1 to 3 days (plates 1-20), 4 to 6 days (plates 21-40), 7 to 10 days (plates 41-60)	10537	1

mRNA member sequences (1)

Alignment image suppressed for unigene with only one aligned EST SGN-E438929
[Show Image]

Markers Information (0)

Unigene Mapped Marker Information

No member sequence or clone is mapped.

COSII Markers Information

None cosii markers associated to this unigene.

Expression Data (0)

No expression data was found associated to this unigene

Annotations (manual: 0 | blast: 2 | go: 0 )

Manual annotations

None manual annotation was found for this unigene

Blast Annotations [Show All]

Database	Program	Best Match	Score	E-value	Identity	Alignment Length	Frame
genbank	blastx	gi\|270232205\|emb\|CBI21528.1\|	131	2e-29	49.32	423 bp (92.6%)	2
Description:	unnamed protein product [Vitis vinifera]
arabidopsis	blastx	At2G21860.1	129	6e-31	52.03	369 bp (80.7%)	2
Description:	violaxanthin de-epoxidase-related \| chr2:9325413-9327070 REVERSE
swissprot	blastx	No significant hits ( or none blast was used over this dataset )

GO Terms Annotations

No Gene Ontology annotation

Protein prediction analysis (2)

Prediction based on longest six frame method

>SGN-P237430 (152 Aa)

FPINRRLNVAGLPNPFLLHYRKINGSMFPSFLWRKITGGGRIVAAVDMDKAEKKTGPVRIVGIVGEGSVSPLKSTPWLDVMLHTIERLKW
VDEEFEMIVFSDNFVKSEDETVKHVSNELDRADILVVVAARKEGSVNWIQSNSQNVPNIICF

SignalP predicts non-secretion with a score of 0.123

No InterPro domain matches or not analyzed.

Prediction based on ESTScan [ Show ESTScan Detail]

>SGN-P93266 (153 Aa)

FPINRRLNVAGLPNPFLLHYRKINGSMFPSFLWRKITGGGRIVAAVDMDKAEKKTGPVRIVGIVGEGSVSPLKSTPWLDVMLHTIERLKW
VDEEFEMIVFSDNFVKSEDETVKHVSNELDRADILVVVAARKEGSVNWIQSNSQNVPNIICFX

SignalP predicts non-secretion with a score of 0.123

No InterPro domain matches or not analyzed.

Gene Family (5)

Family Build (I value*)	Family ID	Annotation**	# Members
1.2	2520	Lipocln_cytFABP	7
2	29032		3
5	94735		1
1.1	103009	Calycin-like	8
2	124507	Calycin-like	3

*i value: controls inflation, a process to dissipate family clusters. At high i value, genes tend to be separated into different families.
**Annotation: the most common InterPro annotation(s) of the Arabidopsis members in the family.

Preceding Unigenes (1)

Unigene	Build
SGN-U262141	Solanum tuberosum #3

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