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Unigene SGN-U295672

Unigene Basic Information

Unigene ID:	SGN-U295672
Unigene Build:	Solanum tuberosum #4
Date:	2005-05-04
Organism:	S.tuberosum
Alternative ID:	295672
mRNA sequence:	Length: 438 bp

>SGN-U295672 Solanum tuberosum #4 (1 members)
GGAGATTGTGTGGCAAACTCCCGCCAACCCACCGGAACGCCATGACTACATCTTCCGTAATGGAATACGCTATGTTAAGCCTTACTACTT
CGAATTCATCTCTCATGTGAAGAATAGGTGGGCTGGGAAGACAATTGTTGATCTCTTCTCTGATGAATCTAAAGGAAGACCTCCTGATTA
CTATGAATCTGCCGCTAAGTCTGGACGTATACAAGATGATGGACAAAAGGTGTCTGTTTCATATGTAGTTCAGTCATCACAAAAAATTAG
CCATTTCCTGCACAGGCGTGAACCACCAGTGATGTCATGGGATGTCGAAATACTATGTGAAGAACCAGATGTGCTGACAGTTTGCAAGCC
TGCTTCTGTTACTGTGCATCCATGTGGACAATACCGCAAGAATACCGTTGTTGGTGTACTACAAGCCGAGTCTGGGCT

[Blast] [AA Translation]

Associated Loci (0)

None

Genomic locations (0)

None

Library representation (1)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Solanum tuberosum	cSTA	Axillary buds of stemp explants; swelling stolons; growing stolons; growing sink-tubers 1 to 3 days (plates 1-20), 4 to 6 days (plates 21-40), 7 to 10 days (plates 41-60)	10537	1

mRNA member sequences (1)

Alignment image suppressed for unigene with only one aligned EST SGN-E441225
[Show Image]

Markers Information (0)

Unigene Mapped Marker Information

No member sequence or clone is mapped.

COSII Markers Information

None cosii markers associated to this unigene.

Expression Data (0)

No expression data was found associated to this unigene

Annotations (manual: 0 | blast: 3 | go: 0 )

Manual annotations

None manual annotation was found for this unigene

Blast Annotations [Show All]

Database	Program	Best Match	Score	E-value	Identity	Alignment Length	Frame
genbank	blastx	gi\|270226976\|emb\|CBI15710.1\|	227	3e-58	79.31	435 bp (99.3%)	3
Description:	unnamed protein product [Vitis vinifera]
arabidopsis	blastx	At5G51140.1	184	1e-47	67.83	429 bp (97.9%)	3
Description:	pseudouridine synthase family protein \| chr5:20801503-20804019 REVERSE
swissprot	blastx	Q0E0Y3	214	1e-55	77.78	432 bp (98.6%)	3
Description:	RNA pseudourine synthase 7 OS=Oryza sativa subsp. japonica GN=Os02g0512300 PE=2 SV=2

GO Terms Annotations

No Gene Ontology annotation

Protein prediction analysis (2)

Prediction based on longest six frame method

>SGN-P237934 (146 Aa)

EIVWQTPANPPERHDYIFRNGIRYVKPYYFEFISHVKNRWAGKTIVDLFSDESKGRPPDYYESAAKSGRIQDDGQKVSVSYVVQSSQKIS
HFLHRREPPVMSWDVEILCEEPDVLTVCKPASVTVHPCGQYRKNTVVGVLQAESGL

SignalP predicts non-secretion with a score of 0.029

No InterPro domain matches or not analyzed.

Prediction based on ESTScan [ Show ESTScan Detail]

>SGN-P93720 (146 Aa)

EIVWQTPANPPERHDYIFRNGIRYVKPYYFEFISHVKNRWAGKTIVDLFSDESKGRPPDYYESAAKSGRIQDDGQKVSVSYVVQSSQKIS
HFLHRREPPVMSWDVEILCEEPDVLTVCKPASVTVHPCGQYRKNTVVGVLQAESGL

SignalP predicts non-secretion with a score of 0.029

No InterPro domain matches or not analyzed.

Gene Family (6)

Family Build (I value*)	Family ID	Annotation**	# Members
1.2	672	PseudoU_synth Rlu_synth Pseud_synth_RluD	28
2	27504	S4 RluA_synth PseudoU_synth Rlu_synth Pseud_synth_RluD	4
5	61666	S4 RluA_synth PseudoU_synth Rlu_synth Pseud_synth_RluD	4
1.1	102101	Pseudouridine synthase - Molecular Function: RNA binding (GO:0003723) - Biological Process: RNA processing (GO:0006396) - Molecular Function: pseudouridine synthase activity (GO:0009982)	22
2	123894	RNA-binding S4 - Molecular Function: RNA binding (GO:0003723) Pseudouridine synthase - Molecular Function: RNA binding (GO:0003723) - Biological Process: RNA processing (GO:0006396) - Molecular Function: pseudouridine synthase activity (GO:0009982) Pseudouridine synthase RluD - Molecular Function: pseudouridylate synthase activity (GO:0004730)	4
5	134059	RNA-binding S4 - Molecular Function: RNA binding (GO:0003723) Pseudouridine synthase - Molecular Function: RNA binding (GO:0003723) - Biological Process: RNA processing (GO:0006396) - Molecular Function: pseudouridine synthase activity (GO:0009982) Pseudouridine synthase RluD - Molecular Function: pseudouridylate synthase activity (GO:0004730)	4

*i value: controls inflation, a process to dissipate family clusters. At high i value, genes tend to be separated into different families.
**Annotation: the most common InterPro annotation(s) of the Arabidopsis members in the family.

Preceding Unigenes (1)

Unigene	Build
SGN-U263097	Solanum tuberosum #3

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