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Unigene SGN-U295827

Unigene Basic Information

Unigene ID:	SGN-U295827
Unigene Build:	Solanum tuberosum #4
Date:	2005-05-04
Organism:	S.tuberosum
Alternative ID:	295827
mRNA sequence:	Length: 435 bp

>SGN-U295827 Solanum tuberosum #4 (1 members)
CTATCTTCAGAAAATCAACAGAAAAAAAATAAATCTTCAAGAGTCTGCATTTTTATCTGAAAAATGCAGAGGAGATCCAAAATGGGATTC
TTGATGAGAAATTTTCTAGTTTTATTTTGTTGGATTATTTTAGCTGTAAATGCAGAAGAATACATTACATACAAAGATCCAAACAAGCCC
TTAAACAGAAGAATCAAAGATTTAATGAAAAGAATGACTTTGGAGAAAAAAATTGGGCAAATGATACAAATTGATCGTACTGCTGCAACT
CCAAAGGTTATGAACAAGTACTACCTANGGAGTGTGTTGAGTGGTGGAGGAAGTGTGCCTAAGAAAGAAGCATCAGCAGAAGATTGGATT
GATATGATAAATGGTTTTCAAAAAGGTTCATTATCAACTAGACTTGGAATACCTATGATTTATGGAATTGATGCT

[Blast] [AA Translation]

Associated Loci (0)

None

Genomic locations (0)

None

Library representation (1)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Solanum tuberosum	cSTA	Axillary buds of stemp explants; swelling stolons; growing stolons; growing sink-tubers 1 to 3 days (plates 1-20), 4 to 6 days (plates 21-40), 7 to 10 days (plates 41-60)	10537	1

mRNA member sequences (1)

Alignment image suppressed for unigene with only one aligned EST SGN-E444914
[Show Image]

Markers Information (0)

Unigene Mapped Marker Information

No member sequence or clone is mapped.

COSII Markers Information

None cosii markers associated to this unigene.

Expression Data (0)

No expression data was found associated to this unigene

Annotations (manual: 0 | blast: 2 | go: 0 )

Manual annotations

None manual annotation was found for this unigene

Blast Annotations [Show All]

Database	Program	Best Match	Score	E-value	Identity	Alignment Length	Frame
genbank	blastx	gi\|224104953\|ref\|XP_002313632.1\|	154	3e-36	65.83	354 bp (81.4%)	2
Description:	predicted protein [Populus trichocarpa] >gi222850040\|gb\|EEE87587.1\| predicted protein [Populus …
arabidopsis	blastx	At5G20950.2	145	1e-35	63.64	330 bp (75.9%)	2
Description:	glycosyl hydrolase family 3 protein \| chr5:7107611-7110777 REVERSE
swissprot	blastx	No significant hits ( or none blast was used over this dataset )

GO Terms Annotations

No Gene Ontology annotation

Protein prediction analysis (2)

Prediction based on ESTScan [ Show ESTScan Detail]

>SGN-P93867 (144 Aa)

YLQKINRKKINLQESAFLSENAEEIQNGILDEKFSSFILLDYFAVNAEEYITYKDPNKPLNRRIKDLMKRMTLEKKIGQMIQIDRTAATP
KVMNKYYLXSVLSGGGSVPKKEASAEDWIDMINGFQKGSLSTRLGIPMIYGIDA

SignalP predicts non-secretion with a score of 0.021

No InterPro domain matches or not analyzed.

Prediction based on longest six frame method

>SGN-P238094 (125 Aa)

KMQRRSKMGFLMRNFLVLFCWIILAVNAEEYITYKDPNKPLNRRIKDLMKRMTLEKKIGQMIQIDRTAATPKVMNKYYLXSVLSGGGSVP
KKEASAEDWIDMINGFQKGSLSTRLGIPMIYGIDA

SignalP predicts secretion with a score of 0.883

No InterPro domain matches or not analyzed.

Gene Family (6)

Family Build (I value*)	Family ID	Annotation**	# Members
1.2	136	Glyco_hydro_3C	98
2	22175	Glyco_hydro_3C Glyco_hydro_3N	50
5	56397	Glyco_hydro_3C Glyco_hydro_3N	50
1.1	101526	Glycoside hydrolase family 3 C-terminal - Molecular Function: hydrolase activity hydrolyzing O-glycosyl compounds (GO:0004553) - Biological Process: carbohydrate metabolism (GO:0005975)	86
2	118610	Glycoside hydrolase family 3 C-terminal - Molecular Function: hydrolase activity hydrolyzing O-glycosyl compounds (GO:0004553) - Biological Process: carbohydrate metabolism (GO:0005975) Glycoside hydrolase family 3 N-terminal - Molecular Function: hydrolase activity hydrolyzing O-glycosyl compounds (GO:0004553) - Biological Process: carbohydrate metabolism (GO:0005975)	44
5	129085	Glycoside hydrolase family 3 C-terminal - Molecular Function: hydrolase activity hydrolyzing O-glycosyl compounds (GO:0004553) - Biological Process: carbohydrate metabolism (GO:0005975) Glycoside hydrolase family 3 N-terminal - Molecular Function: hydrolase activity hydrolyzing O-glycosyl compounds (GO:0004553) - Biological Process: carbohydrate metabolism (GO:0005975)	44

*i value: controls inflation, a process to dissipate family clusters. At high i value, genes tend to be separated into different families.
**Annotation: the most common InterPro annotation(s) of the Arabidopsis members in the family.

Preceding Unigenes (1)

Unigene	Build
SGN-U265710	Solanum tuberosum #3

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