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Unigene SGN-U295920

Unigene Basic Information

Unigene ID:	SGN-U295920
Unigene Build:	Solanum tuberosum #4
Date:	2005-05-04
Organism:	S.tuberosum
Alternative ID:	295920
mRNA sequence:	Length: 150 bp

>SGN-U295920 Solanum tuberosum #4 (1 members)
CTGATGTTAAGCCGGGGCGGAACTTTTCTTATCCTCTGTTGAGCTTCAATAACAGTATCATTTAGTTCACTCACAAAAGTCTCAGCCCAT
TCTTGAGCAGTATGGGTAGTCACATGCAGAAAGTTATGCCTGTGGCGTTTTTCTCTTTCT

[Blast] [AA Translation]

Associated Loci (0)

None

Genomic locations (0)

None

Library representation (1)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Solanum tuberosum	MXLF	Leaves	6585	1

mRNA member sequences (1)

Alignment image suppressed for unigene with only one aligned EST SGN-E614255
[Show Image]

Markers Information (0)

Unigene Mapped Marker Information

No member sequence or clone is mapped.

COSII Markers Information

None cosii markers associated to this unigene.

Expression Data (0)

No expression data was found associated to this unigene

Annotations (manual: 0 | blast: 3 | go: 0 )

Manual annotations

None manual annotation was found for this unigene

Blast Annotations [Show All]

Database	Program	Best Match	Score	E-value	Identity	Alignment Length	Frame
genbank	blastx	gi\|134142842\|gb\|ABO61742.1\|	104	4e-21	100	147 bp (98.0%)	-1
Description:	trehalose-phosphate synthase 1 [Solanum lycopersicum]
arabidopsis	blastx	At1G78580.1	88.6	8e-19	89.36	141 bp (94.0%)	-1
Description:	Symbols: TPS1, ATTPS1 \| ATTPS1 (TREHALOSE-6-PHOSPHATE SYNTHASE); transferase, transferring gly…
swissprot	blastx	Q9SYM4	88.6	1e-17	89.36	141 bp (94.0%)	-1
Description:	Alpha,alpha-trehalose-phosphate synthase [UDP-forming] 1 OS=Arabidopsis thaliana GN=TPS1 PE=1 SV=1

GO Terms Annotations

No Gene Ontology annotation

Protein prediction analysis (2)

Prediction based on longest six frame method

>SGN-P238188 (49 Aa)

EREKRHRHNFLHVTTHTAQEWAETFVSELNDTVIEAQQRIRKVPPRLNI

SignalP predicts non-secretion with a score of 0.047

No InterPro domain matches or not analyzed.

Prediction based on ESTScan [ Show ESTScan Detail]

>SGN-P93950 (50 Aa)

EREKRHRHNFLHVTTHTAQEWAETFVSELNDTVIEAQQRIRKVPPRLNIX

SignalP predicts non-secretion with a score of 0.047

No InterPro domain matches or not analyzed.

Gene Family (6)

Family Build (I value*)	Family ID	Annotation**	# Members
1.2	167	Trehalose_PPase	83
2	22144	Glyco_trans_20	55
5	58248	Glyco_trans_20 Trehalose_PPase Glyco_trans_1	9
1.1	101548	Trehalose-phosphatase - Molecular Function: catalytic activity (GO:0003824) - Biological Process: trehalose biosynthesis (GO:0005992)	77
2	118570	Glycosyl transferase family 20 - Molecular Function: alpha alpha-trehalose-phosphate synthase (UDP-forming) activity (GO:0003825) - Biological Process: trehalose biosynthesis (GO:0005992) Trehalose-phosphatase - Molecular Function: catalytic activity (GO:0003824) - Biological Process: trehalose biosynthesis (GO:0005992)	51
5	130097	Glycosyl transferase family 20 - Molecular Function: alpha alpha-trehalose-phosphate synthase (UDP-forming) activity (GO:0003825) - Biological Process: trehalose biosynthesis (GO:0005992) Trehalose-phosphatase - Molecular Function: catalytic activity (GO:0003824) - Biological Process: trehalose biosynthesis (GO:0005992)	12

*i value: controls inflation, a process to dissipate family clusters. At high i value, genes tend to be separated into different families.
**Annotation: the most common InterPro annotation(s) of the Arabidopsis members in the family.

Preceding Unigenes (0)

None

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