Sol Genomics Network

clone(s) in cart (order)

Old browser version detected

This site is optimized for modern web browsers

Please upgrade your browser

Sorry!, some features may not work in outdated browsers

Sol Genomics Network

Search
- Organisms
- Loci & Genes
- Genome features
- Expression
- Accessions and Plots
- Traits
- QTLs
- Markers
- BACs
- Unigenes
- ESTs and libraries
- Gene Families
- Insitu database
- Images
- People
- FAQ
Maps
- All Maps
- The New Comparative Viewer
- Comparative Viewer
- Submit a map
- Tomato
- Tomato-EXPEN 2000
- Tomato-Kazusa/SolCAP
- Tomato QTLs
- Tomato physical map
- Tomato FPC contig map
- Tomato IL map
- Tomato FISH map
- Tomato AGP map
- Pepper
- Pepper COSII map
- Pepper-AC99
- Pepper-FA03
- Eggplant
- Eggplant COSII map
- Eggplant-LXM 2002
- More Maps
- Potato-TXB 1992
- Tobacco SSR 2007
- Arabidopsis COSII
Genomes
- Sequenced Accessions
- Completed Genomes
- Tomato
- Potato
- Pepper
- Eggplant
- Solanum pennellii
- Solanum lycopersicoides
- Solanum pimpinellifolium
- Solanum lycopersicum var. cerasiforme
- Iochroma cyaneum
- Draft Genomes
- Nicotiana attenuata
- Nicotiana benthamiana
- Nicotiana tabacum
- Petunia axillaris
- Petunia inflata
- Solanum chilense
- Coffea humblotiana
- Resequencing projects
- Solanum lycopersicum inbreds
- 150 Tomato Genome Resequencing Project
- BGI Tomato 360 genomes
- Varitome Project
Projects
Tools
- Sequence Analysis
- BLAST
- VIGS Tool
- Alignment Analyzer
- Tree Browser
- Motif Finder
- Mapping
- Genome Browser (Jbrowse 1)
- SolBrowse Comparative genome viewer
- Jbrowse2 (under development)
- Comparative Map Viewer
- CAPS Designer
- solQTL: QTL Mapping
- Molecular Biology
- In Silico PCR
- Tomato Expression Atlas (TEA)
- Tomato Expression Database (TED)
- Systems Biology
- CRISPget CRISPR designer
- Coffee Interactomic Data
- SGN Ontology Browser
- Breeder Tools
- Breeders Toolbox
- Bulk Query
- FTP Site
- Download Genome Sequences
- Download Gene Sequences
- Clones, Arrays, Unigenes and BACs
- Unigene Converter
About
- About
- Contact
- Cite SGN
- Links
- Help
- FAQ
- Become SGN Editor
- Forum
- FTP data
- SlideShare
- Twitter
- Facebook

Advanced

This site uses cookies to provide logins and other features. Please accept the use of cookies by clicking Accept.

Unigene SGN-U297246

Unigene Basic Information

Unigene ID:	SGN-U297246
Unigene Build:	Solanum tuberosum #4
Date:	2005-05-04
Organism:	S.tuberosum
Alternative ID:	297246
mRNA sequence:	Length: 442 bp

>SGN-U297246 Solanum tuberosum #4 (1 members)
ATCACATACCGACAGGGGAGAAACTGTATGTGTATGATGCAGCAATGAGATACAAATCTGAGGGGCACGACACGATTGTTGTTGCTGGAG
CAGAATATGGGAGTGGGAGTTCCCGTGATTGGGCTGCTAAGGGACCAATGCTACTAGGAGTAAAAGCAGTAATAGCTAAAAGCTTTGAGA
GGATACATCGCAGCAACCTGGTTGGAATGGGACTTATTCCACTTTCCTTTAAGCATGGTGAGGACGCAGAAACACTTGGTTTGACTGGTC
ACGAGTGTTACACTATTGACCTCCCACAGAAGATTTCTGATATAAGGCCTGGACAAGATGTTGCTGTGACTACTGATAGTGGAAAATCTT
TCATCTGTACTCTTAGATTTGACCACAGAGGTTGAGCTGACGTATTCTGAGCATGGTGGCATCCTTCCTTACGTCATTCGGA

[Blast] [AA Translation]

Associated Loci (0)

None

Genomic locations (0)

None

Library representation (1)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Solanum tuberosum	MXLF	Leaves	6585	1

mRNA member sequences (1)

Alignment image suppressed for unigene with only one aligned EST SGN-E615263
[Show Image]

Markers Information (0)

Unigene Mapped Marker Information

No member sequence or clone is mapped.

COSII Markers Information

None cosii markers associated to this unigene.

Expression Data (0)

No expression data was found associated to this unigene

Annotations (manual: 0 | blast: 3 | go: 0 )

Manual annotations

None manual annotation was found for this unigene

Blast Annotations [Show All]

Database	Program	Best Match	Score	E-value	Identity	Alignment Length	Frame
genbank	blastx	gi\|218200594\|gb\|EEC83021.1\|	230	9e-61	85.04	381 bp (86.2%)	1
Description:	hypothetical protein OsI_28098 [Oryza sativa Indica Group]
arabidopsis	blastx	At4G26970.1	219	7e-60	82.68	381 bp (86.2%)	1
Description:	aconitate hydratase, cytoplasmic, putative / citrate hydro-lyase/aconitase, putative \| chr4:13…
swissprot	blastx	Q6YZX6	230	7e-62	85.04	381 bp (86.2%)	1
Description:	Putative aconitate hydratase, cytoplasmic OS=Oryza sativa subsp. japonica GN=Os08g0191100 PE=3 SV=1

GO Terms Annotations

No Gene Ontology annotation

Protein prediction analysis (2)

Prediction based on longest six frame method

>SGN-P239546 (130 Aa)

HIPTGEKLYVYDAAMRYKSEGHDTIVVAGAEYGSGSSRDWAAKGPMLLGVKAVIAKSFERIHRSNLVGMGLIPLSFKHGEDAETLGLTGH
ECYTIDLPQKISDIRPGQDVAVTTDSGKSFICTLRFDHRG

SignalP predicts non-secretion with a score of 0.067

No InterPro domain matches or not analyzed.

Prediction based on ESTScan [ Show ESTScan Detail]

>SGN-P95189 (147 Aa)

HIPTGEKLYVYDAAMRYKSEGHDTIVVAGAEYGSGSSRDWAAKGPMLLGVKAVIAKSFERIHRSNLVGMGLIPLSFKHGEDAETLGLTGH
ECYTIDLPQKISDIRPGQDVAVTTDMENLSSVLLDLTTEVELTYSEHGGILPYVIRX

SignalP predicts non-secretion with a score of 0.067

No InterPro domain matches or not analyzed.

Gene Family (6)

Family Build (I value*)	Family ID	Annotation**	# Members
1.2	583	Cis-H_aconitase LeuC Aconitase_1 Aconitase_N Homoaconitase Aconitase_mito Aconitase_put	31
2	22702	Cis-H_aconitase LeuC Aconitase_1 Aconitase_N Aconitase_C Homoaconitase Aconitase_mito Aconitase_put	21
5	56901	Cis-H_aconitase LeuC Aconitase_1 Aconitase_N Aconitase_C Homoaconitase Aconitase_mito Aconitase_put	20
1.1	101936	Aconitate hydratase N-terminal - Biological Process: metabolism (GO:0008152) - Molecular Function: lyase activity (GO:0016829)	28
2	119188	Aconitate hydratase N-terminal - Biological Process: metabolism (GO:0008152) - Molecular Function: lyase activity (GO:0016829) Aconitate hydratase C-terminal - Biological Process: metabolism (GO:0008152) - Molecular Function: hydro-lyase activity (GO:0016836) Aconitate hydratase 1 - Molecular Function: RNA binding (GO:0003723) - Molecular Function: aconitate hydratase activity (GO:0003994) - Molecular Function: iron ion binding (GO:0005506)	19
5	129539	Aconitate hydratase N-terminal - Biological Process: metabolism (GO:0008152) - Molecular Function: lyase activity (GO:0016829) Aconitate hydratase C-terminal - Biological Process: metabolism (GO:0008152) - Molecular Function: hydro-lyase activity (GO:0016836) Aconitate hydratase 1 - Molecular Function: RNA binding (GO:0003723) - Molecular Function: aconitate hydratase activity (GO:0003994) - Molecular Function: iron ion binding (GO:0005506)	19

*i value: controls inflation, a process to dissipate family clusters. At high i value, genes tend to be separated into different families.
**Annotation: the most common InterPro annotation(s) of the Arabidopsis members in the family.

Preceding Unigenes (0)

None

Your Lists

Public Lists

List Contents

List Validation Report: Failed

Elements not found:

Optional: Add Missing Accessions to A List

Mismatched case

Click the Adjust Case button to align the case in the list with what is in the database.

Multiple mismatched case

Items listed here have mulitple case mismatches and must be fixed manually. If accessions need to be merged, contact the database directly.

List elements matching a synonym

Multiple synonym matches

Multiple synonym matches have to be resolved manually. Contact database administrators if necessary.

Fuzzy Search Results

Synonym Search Results

Create a New List from Unique Names:

Available Seedlots

Accessions	Seedlots
Accessions		Breeding Program	Seedlot Name	Contents	Seedlot Location	Count	Weight(g)

Create a New List from Selected Seedlots:

Manage Seedlots

Your Datasets

Public Datasets

Dataset Contents

Dataset Validation Failed

Elements not found:

Your Calendar

Having trouble viewing events on the calendar?
Are you associated with the breeding program you are interested in viewing?

Calendar Permissions

Add New Event

Project:

Event Type:

Start:

End:

Description:

Web URL:

http://www.

Event Info

Attribute	Value
Project Name:
Start Date:
End Date:
Event Type:
Event Description:
Event Web URL:

Edit Event

Project:

Event Type:

Start:

End:

Description:

Web URL:

Login

Show Password

Forgot Username

If you've forgotten your username, enter your email address below. An email will be sent with any account username(s) associated with your email address.

Email Address

Reset Password

To reset your password, please enter your email address. A link will be sent to that address with a link that will enable you to reset your password.

Email Address

Create New User

Notice

Before creating a new account, please check if you already have an account using the directory search.
A link will be emailed to you. Please click on it to activate the account.
All fields are required.

First Name:

Last Name:

Organization:

Username:

Username must be at least 7 characters long.

Password:

Password must be at least 7 characters long and different from your username.

Confirm Password:

Password must be at least 7 characters long and different from your username.

Email Address:

An email will be sent to this address requiring you to confirm its receipt to activate your account.