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Unigene SGN-U298065

Unigene Basic Information

Unigene ID:	SGN-U298065
Unigene Build:	Solanum tuberosum #4
Date:	2005-05-04
Organism:	S.tuberosum
Alternative ID:	298065
mRNA sequence:	Length: 289 bp

>SGN-U298065 Solanum tuberosum #4 (1 members)
TAATTTTTTTTTTTTTTTTTTTAAACTGAAAGGATGTTCATATAGTAGCATTGCAATGAAAATACAACAGGAGTGCATACCAACAAAACA
CATCTTATTGCACATTCAACTACTACGAGCACCAAACATCCTATTCAACCAAGATATGATTTCGTGCAGTAAAATTCTAGAAATACAAAT
TTCATACTTATCTACAGCGGCCTATTGATAATTTGGATCTCTTCCAGGCATGTTTTGATTCTGAAGAGGGTTTCCACCAGACGTATTCGG
AGCATAGTTCTGACTTGGA

[Blast] [AA Translation]

Associated Loci (0)

None

Genomic locations (0)

None

Library representation (1)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Solanum tuberosum	CSWB	Tubers	6124	1

mRNA member sequences (1)

Alignment image suppressed for unigene with only one aligned EST SGN-E597841
[Show Image]

Markers Information (0)

Unigene Mapped Marker Information

No member sequence or clone is mapped.

COSII Markers Information

None cosii markers associated to this unigene.

Expression Data (0)

No expression data was found associated to this unigene

Annotations (manual: 0 | blast: 0 | go: 0 )

Manual annotations

None manual annotation was found for this unigene

Blast Annotations [Show All]

Database	Program	Best Match
genbank	blastx	No significant hits ( or none blast was used over this dataset )

arabidopsis	blastx	No significant hits ( or none blast was used over this dataset )

swissprot	blastx	No significant hits ( or none blast was used over this dataset )

GO Terms Annotations

No Gene Ontology annotation

Protein prediction analysis (2)

Prediction based on ESTScan [ Show ESTScan Detail]

>SGN-P95941 (28 Aa)

PSQNYAPNTSGGNPLQNQNMPGRDPNYQ

SignalP predicts non-secretion with a score of 0.023

No InterPro domain matches or not analyzed.

Prediction based on longest six frame method

>SGN-P240380 (68 Aa)

NFFFFFFKLKGCSYSSIAMKIQQECIPTKHILLHIQLLRAPNILFNQDMISCSKILEIQISYLSTAAY

SignalP predicts non-secretion with a score of 0.407

No InterPro domain matches or not analyzed.

Gene Family (5)

Family Build (I value*)	Family ID	Annotation**	# Members
1.2	367	Extensin_2	46
2	22201	Extensin_2	46
5	56659	Extensin_2	27
1.1	101360	Protein kinase - Molecular Function: protein kinase activity (GO:0004672) - Molecular Function: ATP binding (GO:0005524) - Biological Process: protein amino acid phosphorylation (GO:0006468)	4049
2	118668	Proteinase inhibitor propeptide	37

*i value: controls inflation, a process to dissipate family clusters. At high i value, genes tend to be separated into different families.
**Annotation: the most common InterPro annotation(s) of the Arabidopsis members in the family.

Preceding Unigenes (0)

None

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