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Unigene SGN-U298093

Unigene Basic Information

Unigene ID:	SGN-U298093
Unigene Build:	Solanum tuberosum #4
Date:	2005-05-04
Organism:	S.tuberosum
Alternative ID:	298093
mRNA sequence:	Length: 460 bp

>SGN-U298093 Solanum tuberosum #4 (1 members)
TTCGCTACCATTTTCATTACAGTAGAAAGTTTCTCTCTAAAACTACTTGAAAGAAATCAGAGTTCAGACTGCTTCCAGAAATTTGAATCG
CCATCAACTTTTTGGGAACTCTTCAAGTGACGTTCTTCATTTTGGGATGGGGGACGCGGAATCTCTTCAACCATCAAAGAAAAGGGCTGC
TGTAAAGGAACTATCACGAGATAATCCTGGTCTTGATGATGATAATGAGTCATCTGAACAGGAGAATGGAACTTTCAAGAGAGCAAGCGA
TGAGGTGATGGCAAATAGGAGAATTGTCAAAGTTCGTAAAGCAGCATCGACTACAACTACTCCTTCTTCTAACCCTTTTGCGGCGATCCA
GTATGTTCCACCTGCTAATACCAGTACAACTCCTGCCGTGACCACAACTGAAGCTGGGAATGGGACAACATCTTCCAAGAAACCAGAAGA
TTCAAATGAT

[Blast] [AA Translation]

Associated Loci (0)

None

Genomic locations (0)

None

Library representation (1)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Solanum tuberosum	cSTB	leaves and petioles 8 weeks old plants	10327	1

mRNA member sequences (1)

Alignment image suppressed for unigene with only one aligned EST SGN-E475648
[Show Image]

Markers Information (0)

Unigene Mapped Marker Information

No member sequence or clone is mapped.

COSII Markers Information

None cosii markers associated to this unigene.

Expression Data (0)

No expression data was found associated to this unigene

Annotations (manual: 0 | blast: 2 | go: 0 )

Manual annotations

None manual annotation was found for this unigene

Blast Annotations [Show All]

Database	Program	Best Match	Score	E-value	Identity	Alignment Length	Frame
genbank	blastx	gi\|18403992\|ref\|NP_564606.1\|	87.4	5e-16	69.49	174 bp (37.8%)	3
Description:	Ran-binding protein 1 domain-containing protein / RanBP1 domain-containing protein [Arabidopsis…
arabidopsis	blastx	At1G52380.1	87.4	3e-18	69.49	174 bp (37.8%)	3
Description:	Ran-binding protein 1 domain-containing protein / RanBP1 domain-containing protein \| chr1:1951…
swissprot	blastx	No significant hits ( or none blast was used over this dataset )

GO Terms Annotations

No Gene Ontology annotation

Protein prediction analysis (2)

Prediction based on longest six frame method

>SGN-P240409 (140 Aa)

NYLKEIRVQTASRNLNRHQLFGNSSSDVLHFGMGDAESLQPSKKRAAVKELSRDNPGLDDDNESSEQENGTFKRASDEVMANRRIVKVRK
AASTTTTPSSNPFAAIQYVPPANTSTTPAVTTTEAGNGTTSSKKPEDSND

SignalP predicts non-secretion with a score of 0.031

No InterPro domain matches or not analyzed.

Prediction based on ESTScan [ Show ESTScan Detail]

>SGN-P95967 (153 Aa)

FATIFITVESFSQNYLKEIRVQTASRNLNRHQLFGNSSSDVLHFGMGDAESLQPSKKRAAVKELSRDNPGLDDDNESSEQENGTFKRASD
EVMANRRIVKVRKAASTTTTPSSNPFAAIQYVPPANTSTTPAVTTTEAGNGTTSSKKPEDSND

SignalP predicts non-secretion with a score of 0.072

No InterPro domain matches or not analyzed.

Gene Family (6)

Family Build (I value*)	Family ID	Annotation**	# Members
1.2	885	EVH1 Ran_BP1	21
2	23640	EVH1 Ran_BP1	11
5	58054	EVH1 Ran_BP1	10
1.1	101557	RanBP1 - Biological Process: intracellular transport (GO:0046907) Pleckstrin homology-type	74
2	120350	RanBP1 - Biological Process: intracellular transport (GO:0046907) Pleckstrin homology-type	9
5	130633	RanBP1 - Biological Process: intracellular transport (GO:0046907) Pleckstrin homology-type	9

*i value: controls inflation, a process to dissipate family clusters. At high i value, genes tend to be separated into different families.
**Annotation: the most common InterPro annotation(s) of the Arabidopsis members in the family.

Preceding Unigenes (1)

Unigene	Build
SGN-U265837	Solanum tuberosum #3

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