Sol Genomics Network

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This unigene is from an out-of-date build, Tomato 200607 #1
It has been superseded by SGN-U577434 in the current build, Tomato 200607 #2

Unigene SGN-U312613

Unigene Basic Information

Unigene ID:	SGN-U312613
Unigene Build:	Tomato 200607 #1
Date:	2006-07-27
Organism:	S.lycopersicum S.habrochaites S.pennellii S.pimpinellifolium S.peruvianum S.cheesmaniae S.lycopersicoides
Alternative ID:	312613
mRNA sequence:	Length: 1388 bp

>SGN-U312613 Tomato 200607 #1 (76 members)
GCAACTTCACTTGCTCTCTCCTACTTCTTTCTTAGCAACTTTCCCCCTTCATAAATCCATTTATATGCTCACACACACACATATTTCACA
AAATTAATTACCAATTTTGTCATCATTGAAGTTTCACAAAATGGAGAAAGTTAAAAGTATGGAGAAAAAGAAATTGATTAATGAGTTAAC
ACAAGGGAAGGAATTTGTAAACCAATTGAAAAATCAGATAATTGGTCCATTAGCTTCTCCTGAGGAATGTGATTTACTAATTGGGAAAAT
ATTGTCTACACTTGAAAAATCATTATCAATTCTCAATTTGAAGGCTCTTCTTCTTGAAGGTGGAATTAATAATATTAACAATTCTACATC
TTCATGTTCATCGATTTCATTTCTTGGTAGTAGTAATAATAATATTAGTCCCAAGAGTGAAGTTTTTGATTCTTCAAGGGAAAAATTGGA
CAAAAATATGGTCTCCAAGAAAAGAAAGAAAACACAACAATGGATTAATCAAACAAGCATTTCTGTAAATGGGCTTGAAGGTCCATGTGA
AGATGGATTTAGTTGGAGAAAATATGGCCAAAAAGATATTTTAGGGGCTAGTCATCCAAGGGCTTATTATAGGTGTACTCATAGGAACAC
ACAGGGGTGTTTGGCTACAAAACAAGTCCAAAAATCAGATGCAAATTCAACAATTTTTGAAGTGACATATAAAGGAAGGCACAGTTGCAA
AGTTGCACAATCTGAAATATTTTCACTTAATAACCAAAAACGCCAGAAATGCAACAAAAAACAACAAGAAGAAATGGTAATATTCAACTC
TGCAACACCAAACCATAACGCTGAAAACTTTAACATTATAACAGCAAAAGATGAAGAGGTTTTCACGGCGTTCCCATTCCCTCCTGCACC
ACTACACATCGAAAATATTATCGAAGAAAATAAATTCTTTCCAGATTCGTCAGAGTTACCATTATACTTGGCGTCCCCAAATGATGAATT
TGGAATGGAACACATGATTCTACAGAGCTCAGATTCAGATCTTACTGAATTGATATCAACTCCGACTTCGATTTCAAATTCCTCATTTGG
TGGAGAAGGGGTGGATTATGAACCTGAAATCACATTTGACATTGAAGAATTCTTCATTTAATTTGAAATTTAGAGAATTCATTGCAAGTT
TGTAATAGCAGGAAGTAAGTTTTGTGCAATAATTTTTGTTGTTATTTTTAGCCTAATTGATCCTAAGCTAAAGTCAATTGACTGATGTTT
AAGAGAAATAGTTGTAGTAAAATTGTAACGTCGATGAATTCATGTTTGTAATTACAAGCTTTCGCTATTGAAATTCAAGTTGCATTTCAA
TTTTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

[Blast] [AA Translation]

Associated Loci (0)

None

Genomic locations (0)

None

Library representation (11)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Solanum lycopersicum	FA	Fruit Mixture of Immature green, mature green, breaker, turning, and red ripe stages	13933	1
Solanum lycopersicum	TUS	Rearrayed collection of L. esculentum cDNA clones	37722	6
Solanum lycopersicum	cLEC	combined undifferentiated and shooting callus 7-10 days post germination	14114	17
Solanum lycopersicum	cLED	ovary 5 days pre-anthesis to 5 days post-anthesis	9878	43
Solanum lycopersicum	cLEF	fruit pericarp mature green	5317	1
Solanum lycopersicum	cLEG	fruit pericarp breaker fruit	15207	2
Solanum lycopersicum	cLET	leaf 4-6 weeks	9135	1
Solanum lycopersicum	cLEW	mixed roots grown under different nutrient and mineral difficiencies 4-8 weeks	3175	1
Solanum lycopersicum	cLEZ	root germinating seedlings	2373	1
Solanum lycopersicum	cTOE	Crown gall crown galls from full-grown plants (4-8 wks old)	5204	2
Solanum lycopersicum	cTOF	shoot developing shoots from 4-6wks old plants	9122	1

mRNA member sequences (76)

Alignment image suppressed for unigene with 76 aligned sequences.
[Show Image]

Markers Information (0)

Expression Data (6)

Annotations (manual: 0 | blast: 2 | go: 5 )

Protein prediction analysis (2)

Gene Family (3)

Family Build (I value*)	Family ID	Annotation**	# Members
1.1	101416	DNA-binding WRKY - Molecular Function: transcription factor activity (GO:0003700) - Cellular Component: nucleus (GO:0005634) - Molecular Function: sequence-specific DNA binding (GO:0043565) - Biological Process: regulation of transcription (GO:0045449)	230
2	120860		8
5	132988		5

Preceding Unigenes (1)

Unigene	Build
SGN-U212725	Lycopersicon Combined #3

Accessions	Seedlots
Accessions		Breeding Program	Seedlot Name	Contents	Seedlot Location	Count	Weight(g)

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