Sol Genomics Network

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This unigene is from an out-of-date build, Tomato 200607 #1
It has been split into SGN-U578661 and SGN-U579507 in the current build, Tomato 200607 #2

Unigene SGN-U313196

Unigene Basic Information

Unigene ID:	SGN-U313196
Unigene Build:	Tomato 200607 #1
Date:	2006-07-27
Organism:	S.lycopersicum S.habrochaites S.pennellii S.pimpinellifolium S.peruvianum S.cheesmaniae S.lycopersicoides
Alternative ID:	313196
mRNA sequence:	Length: 1512 bp

>SGN-U313196 Tomato 200607 #1 (50 members)
TTTCTCTGTGTGCGCATTTATCTGTATACATTATTCGGCATTTGCAGGTCGGAGAATCTGATCGGAGCAAGTTGTGATCGACGATCGGAG
TTGAAAGGCTTGTAGTTGTTAAATTCATCCATAAGGCTAAATGGGAGACATAGTGATTGAACATTCAGGGTCGCCACATTATGAGGCCTT
GAACTTGCAAAATGTTACAACATCTGAGAATGATGCTGATCTGGTTCGGAGTTACTGTGGGGGCTTCTTTCCTGAGGGTAGTACACATGA
AGAAAAATCCACTTGCACCGAAGCCCTCGACAGAGGATTCTTTGAATATGGATGTTCCCACTATCGCCGTAGATGTCGCATTAGAGCCCC
ATGCTGCGATGAGATGTTTGACTGCAGGCATTGTCATAATGAATCTAAGAACAATATCAACATTGACCAGAAACTTCGACATGAGATTCC
TCGTCACAAGGTGGAAAGGATTATATGCTCACTTTGTAATACAGAGCAAGAGGTTCGGCAAGTTTGCATCAATTGCGGTGTGTGCATGGG
GAGATATTTCTGTGAAACGTGTAAGCTATTTGATGATGATATATCCAAAAGACAGTATCACTGCAGTGGTTGTGGGATATGCAGGATTGG
TGGGATGGAGAACTTCTTCCACTGTCCCAAATGCAGATGTTGTCATTCTGTTCTATTGAGGAACAGCCACCCCTGTGTAGAGGGGGCAAT
GCATCATGACTGTCCTGTTTGTTTTGAGTATCTCTTTGAGTCGATAAATGATGTAACAGTCATGCCTTGTGGACACACTATTCATAAGAA
CTGTTTGAAGGAGATGCAGGAACACTACCAATATGCTTGTCCTCTCTGCTGTAAGTCGGTATGTGATATGTCAAAGGTGTGGGAGAAATT
TGACATGGAAATTGCTGCAACACCAATGCCCGAACCTTATCAAGACAAGAAGGTTTGGATCCTTTGTAATGATTGTGGAATCACCTCAGA
AGTGCAATATCACTTTGTGGCCCAGAAATGTCCATGTTGCAAATCTTACAACACCCGCCAAACAAGAGGTGGATAAAAGGACCAAATATC
AATAGCCAATCTGGCTTTCAAGTGAAAATGATCCCACACCCTATGTGGCTAGGGTGGTACCTCTGAGTGGGAATGATTGGGCTTTACAAG
CTAAGCTTGTAGAAGAAATAACGGAAAGAAGGGGTTCTAATATGATCCTGCTTGTAACACTTCTGAGGTTATCGTGTTTTCGCGTTTTAG
TAGTACGTGCGTTTTATATGCCAGTGCAATTTTCAAGACACTGATTATTTGTTCAGTGTTAGCCCTATTATTGTTGGCATGTGTGATTCA
ATCCTTTATAGCACAAAGCGAGTTGGACTGTGGCATGTTAAGTGGCTGAGAGACTTGATGTGTTGTGTGATATGTATTTTCCAGTTAATT
ACTCACTTGAAGATAAATTTGTATTATTACTTCATATTTAAAAAAAAGTATATTTCTTTAAAAAAAAAAAAA

[Blast] [AA Translation]

Associated Loci (0)

None

Genomic locations (0)

None

Library representation (8)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Solanum lycopersicum	TUS	Rearrayed collection of L. esculentum cDNA clones	37722	14
Solanum lycopersicum	cLEC	combined undifferentiated and shooting callus 7-10 days post germination	14114	5
Solanum lycopersicum	cLEF	fruit pericarp mature green	5317	1
Solanum lycopersicum	cLEG	fruit pericarp breaker fruit	15207	24
Solanum lycopersicum	cLEN	fruit pericarp red ripe to over-ripe	3979	2
Solanum lycopersicum	cLER	leaf 4 weeks	5127	2
Solanum lycopersicum	cTOF	shoot developing shoots from 4-6wks old plants	9122	1
Solanum lycopersicum	cTOS	suspension cultures	8026	1

mRNA member sequences (50)

Alignment image suppressed for unigene with 50 aligned sequences.
[Show Image]

Markers Information (0)

Expression Data (13)

Annotations (manual: 1 | blast: 2 | go: 5 )

Protein prediction analysis (2)

Gene Family (3)

Family Build (I value*)	Family ID	Annotation**	# Members
1.1	101825	Zinc finger RING-type - Molecular Function: protein binding (GO:0005515) - Molecular Function: zinc ion binding (GO:0008270) Zinc finger CHY-type - Molecular Function: zinc ion binding (GO:0008270)	34
2	119302	Zinc finger RING-type - Molecular Function: protein binding (GO:0005515) - Molecular Function: zinc ion binding (GO:0008270) Zinc finger CHY-type - Molecular Function: zinc ion binding (GO:0008270)	17
5	134120		4

Preceding Unigenes (1)

Unigene	Build
SGN-U213360	Lycopersicon Combined #3

Accessions	Seedlots
Accessions		Breeding Program	Seedlot Name	Contents	Seedlot Location	Count	Weight(g)

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