Sol Genomics Network

This unigene is from an out-of-date build, Tomato 200607 #1
It has been split into SGN-U584601, SGN-U584603, and SGN-U586628 in the current build, Tomato 200607 #2

Unigene SGN-U313426

Unigene Basic Information

Unigene ID:	SGN-U313426
Unigene Build:	Tomato 200607 #1
Date:	2006-07-27
Organism:	S.lycopersicum S.habrochaites S.pennellii S.pimpinellifolium S.peruvianum S.cheesmaniae S.lycopersicoides
Alternative ID:	313426
mRNA sequence:	Length: 2689 bp

>SGN-U313426 Tomato 200607 #1 (63 members)
CAAAATTTTCATTTATCTTTTCTCTCTATTTTTTTTCTTTATTTTTATTGGCCGGAGCTCCGGTAGTCTGCCTGTCGGAGTTTATTTTTG
TCGGCAAAGATGGGAGTGACTATTTTAACAGATCTCGGAATGGAGATTTTGATTCCGATATGTGCCGTTGTCGGCATAGCTTTCTCGCTC
TTCCAGTGGTATCTCGTCTCCAAAGTTACGGTCGGTACTGATAAGTCTCATTCCTCCGGCGACGATAAGAATGGATATGCTGAATCTCTC
ATTGAAGAAGAAGAAGGCATCAATGACCATAACGTTGTTCAAAAATGCGCTGAAATTCAAAACGCTATCTCTGAAGGAGCAACCTCATTT
CTCTTTACGATGTACCAGTATGTTGGTGTTTTCATGGTTGCTTTCGCAATTTTGATCTTCGTTTTCCTCGGCTCTGTTGAGGGATTCAGC
ACGAAGAACCAGCCGTGCACATATGACAGCACCAAAACTTGCAAGCCAGCTCTTGCAACTGCTGTCTTCAGCACTGTATCATTTCTGCTT
GGTGCTGTTACCTCTGTGGTGTCCGGGTTCCTTGGAATGAAAATTGCCACATATGCAAATGCCCGAACTACCTTGGAGGCTAGAAAAGGT
GTTGGGAAGGCTTTTATTGTTGCATTTAGATCTGGTGCTGTGATGGGTTTCCTTCTTGCTGCAAATGGTCTTTTGGTTTTATTTATAACC
ATCCTTCTATTTAAGATGTACTACGGTGATGACTGGGAAGGTCTATTTGAGGCTATAACTGGTTATGGTCTTGGTGGATCTTCAATGGCC
CTCTTTGGTAGAGTTGGTGGAGGTATTTATACCAAAGCAGCAGATGTTGGAGCTGATCTTGTGGGCAAGGTGGAGAGGAACATTCCTGAA
GATGATCCTAGAAACCCAGCGGTGATTGCTGACAATGTTGGAGACAATGTCGGAGATATTGCTGGTATGGGATCAGATCTTTTTGGATCT
TATGCAGAGTCATCCTGTGCAGCTCTTGTTGTTGCTTCAATCTCATCCTTTGGTGTCAATCATGAGCTTACTGCTATGCTATATCCCCTT
CTCGTCAGCTCTGTCGGCATCCTTGTGTGTTTGCTTACCACCTTATTTGCAACTGATTTCTTTGAAGTCAAGGCTGTTAAGGAAATTGAG
CCAGCATTGAAGAAGCAACTCATTATCTCAACCATTCTCATGACTATTGGAATTGCTTTTGTTAGTTGGATTGCCCTTCCATCGACCTTC
ACAATATTCAATTTTGGAGTTCAGAAAGAAGTAAAGAACTGGCAATTGTTCTTGTGTGTTGGAGTTGGTTTGTGGGCTGGACTCATTATT
GGGTTTGTCACTGAGTACTATACCAGCAATGCCTACAGCCCCGTCCAAGATGTTGCTGATTCATGCCGCACTGGTGCTGCCACCAATGTC
ATCTTTGGCCTTGCCTTGGGTTACAAATCCGTCATCATTCCCATTTTTGCCATTGCAATCAGTATATTTGTTAGCTTCAGCTTTGCTGCA
ATGTACGGCATTGCAGTTGCTGCCCTTGGAATGCTGAGCACTATAGCCACTGGTTTGGCAATTGATGCATATGGTCCCATTAGTGATAAT
GCAGGAGGTATTGCTGAGATGGCTGGAATGAGCCACAGAATCAGAGAGAGAACCGATGCACTTGATGCTGCAGGAAACACCACTGCTGCT
ATTGGAAAGGGATTTGCTATTGGTTCTGCTGCACTTGTGTCTCTTGCCCTCTTTGGGGCGTTTGTCAGCCGGGCAGCAATTTCCACTGTA
GATGTCTTGACTCCTAAAGTCTTTATTGGTCTGCTAGTCGGTGCAATGCTTCCTTATTGGTTCTCCGCCATGACAATGAAGAGTGTTGGA
AGTGCTGCTCTTAAGATGGTTGAGGAAGTGCGTAGGCAATTCAACACCATCCCTGGTCTCATGGAAGGAACTGCCAAGCCTGACTATGCC
ACCTGTGTCAAGATCTCCACAGATGCATCGATCAAGGAGATGATTCCACCTGGTGCCCTCGTCATGCTCACTCCATTGATTGTTGGTATC
TTGTTTGGCGTCGAAACACTTTCTGGTGTTCTTGCAGGATCTCTCGTCTCTGGTGTACAGATTGCCATTTCTGCATCCAACACTGGTGGT
GCCTGGGACAACGCTAAGAAGTACATCGAGGCTGGAGCCTCAGAACATGCTAGGACTCTTGGCCCCAAGGGATCTGATGCACACAAAGCT
GCTGTAATTGGTGACACTGTTGGTGACCCTCTCAAGGACACATCTGGACCATCATTGAACATTCTTATCAAGCTGATGGCTGTCGAGTCC
CTCGTGTTTGCTCCCTTCTTTGCCACTCACGGTGGTCTTCTCTTCAAGTTATTTTAATGCAACCAACTCCTATGTCTGTCACATGACTGT
ATGATGAATCTCTATTATTCCTCTTTTCTCTTCCCATTCAAACTTTCGGTTTCAATCATTTTTCGTGTTTTTAGTATCTAGAATGTTGGG
ATTAGCATATGGTGTTAGGTTGTGATGATGATGATATGATGGTAAGGGTGAAGTGATTTTGCAGAGTTCAGAAGAAACATCAAATGTTCT
TTCCTAGAGTAATTGTATCAGTTTTTTCTCTCCTCTTTAATACCTTCTTCTCATTGCCCTTTTTGGGTATTCAATTTTT

[Blast] [AA Translation]

Associated Loci (1)

Locus symbol	Locus name	Gene activity
vp1d1	vacuolar-type H+-pyrophosphatase

Genomic locations (0)

None

Library representation (23)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Solanum pennellii	cLPT	leaf trichomes 4-8 weeks old	2729	3
Solanum lycopersicum	FA	Fruit Mixture of Immature green, mature green, breaker, turning, and red ripe stages	13933	7
Solanum lycopersicum	LA	Leaf Mature leaves	6589	3
Solanum lycopersicum	LB	Leaf Mature leaves	3316	2
Solanum lycopersicum	LC	Leaf Mature leaves	5712	8
Solanum lycopersicum	TUS	Rearrayed collection of L. esculentum cDNA clones	37722	7
Solanum lycopersicum	cLEC	combined undifferentiated and shooting callus 7-10 days post germination	14114	2
Solanum lycopersicum	cLEF	fruit pericarp mature green	5317	1
Solanum lycopersicum	cLEG	fruit pericarp breaker fruit	15207	4
Solanum lycopersicum	cLEI	whole seedlings germinating seed	3927	4
Solanum lycopersicum	cLEM	fruit immature green fruit	4240	2
Solanum lycopersicum	cLEN	fruit pericarp red ripe to over-ripe	3979	3
Solanum lycopersicum	cLER	leaf 4 weeks	5127	2
Solanum lycopersicum	cLET	leaf 4-6 weeks	9135	3
Solanum lycopersicum	cLEW	mixed roots grown under different nutrient and mineral difficiencies 4-8 weeks	3175	2
Solanum lycopersicum	cLEX	root fruit-set stage/post-fruit loading	3142	1
Solanum lycopersicum	cLEY	root pre-anthesis/pre-fruit loading	3259	2
Solanum lycopersicum	cLEZ	root germinating seedlings	2373	1
Solanum lycopersicum	cTOF	shoot developing shoots from 4-6wks old plants	9122	1
Solanum lycopersicum	cTSB	seed	1880	2
Solanum lycopersicum	cTSC	seed	2256	1
Solanum lycopersicum	vSlycmRNA		8362	1
Solanum pimpinellifolium	vSpimpmRNA		8	1

mRNA member sequences (63)

Alignment image suppressed for unigene with 63 aligned sequences.
[Show Image]

Markers Information (0)

Expression Data (7)

Annotations (manual: 7 | blast: 2 | go: 5 )

Protein prediction analysis (2)

Gene Family (3)

Family Build (I value*)	Family ID	Annotation**	# Members
1.1	101861	Inorganic H+ pyrophosphatase - Molecular Function: inorganic diphosphatase activity (GO:0004427) - Molecular Function: hydrogen-translocating pyrophosphatase activity (GO:0009678) - Biological Process: proton transport (GO:0015992) - Cellular Component: membrane (GO:0016020)	32
2	118985	Inorganic H+ pyrophosphatase - Molecular Function: inorganic diphosphatase activity (GO:0004427) - Molecular Function: hydrogen-translocating pyrophosphatase activity (GO:0009678) - Biological Process: proton transport (GO:0015992) - Cellular Component: membrane (GO:0016020)	23
5	129374	Inorganic H+ pyrophosphatase - Molecular Function: inorganic diphosphatase activity (GO:0004427) - Molecular Function: hydrogen-translocating pyrophosphatase activity (GO:0009678) - Biological Process: proton transport (GO:0015992) - Cellular Component: membrane (GO:0016020)	23

Preceding Unigenes (1)

Unigene	Build
SGN-U213604	Lycopersicon Combined #3

Accessions	Seedlots
Accessions		Breeding Program	Seedlot Name	Contents	Seedlot Location	Count	Weight(g)

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