Sol Genomics Network

This unigene is from an out-of-date build, Tomato 200607 #1
It has been superseded by SGN-U572742 in the current build, Tomato 200607 #2

Unigene SGN-U313745

Unigene Basic Information

Unigene ID:	SGN-U313745
Unigene Build:	Tomato 200607 #1
Date:	2006-07-27
Organism:	S.lycopersicum S.habrochaites S.pennellii S.pimpinellifolium S.peruvianum S.cheesmaniae S.lycopersicoides
Alternative ID:	313745
mRNA sequence:	Length: 2281 bp

>SGN-U313745 Tomato 200607 #1 (48 members)
TTCTTATAGCCATTTTGCCTCTTCCTTTCACTTCTCTCACCTTTATCGACCAACAATGGCGGCTGCTGCCTCACCATCTCCATGTTTCTC
CAAAACCCTACCTCCATCTTCCTCCAAATCTTCCACCATTCTACCTAGATCTACCTTCTCTTTCCACAATCACCCACAAAAAGCCTCACC
CCTTCATCTCATCCACGCTCAACATAATCGTCGTGGTTTTGCCGTTGCCAATGTCGTCATATCCACTACCACCCATAACGACGTTTCTGA
ACCTGAAACATTCGTTTCCCGTTTCGCCCCTGACGAACCCAGAAAGGGTTGTGATGTTCTTGTGGAGGCACTTGAAAGGGAAGGTGTTAC
GGATGTATTTGCATACCCAGGAGGTGCTTCTATGGAGATTCATCAAGCTTTGACACGTTCGAATATTATTCGTAATGTGCTACCACGTCA
TGAGCAAGGTGGTGTGTTTGCTGCAGAGGGTTACGCACGGGCTACTGGGTTCCCTGGTGTTTGCATTGCTACCTCTGGTCCCGGAGCTAC
AAATCTTGTTAGTGGTCTTGCGGATGCTTTGTTAGATAGTATTCCGATTGTTGCTATTACAGGTCAAGTGCCAAGGAGGATGATTGGTAC
TGATGCGTTCCAGGAAACGCCTATTGTTGAGGTAACGAGATCTATTACGAAGCATAATTATCTTGTTATGGATGTAGAAGATATTCCTAG
GGTTGTTCGTGAAGCATTTTTTCTTGCGAAATCGGGACGGCCTGGCCCAGTTTTGATTGATGTACCTAAGGATATTCAGCAACAATTGGT
GATACCTAATTGGGATCAGCCAATGAGGTTGCCTGGTTACATGTCTAGGTTACCTAAATTGCCTAATGAAATGCTTTTGGAACAAATTGT
TAGGCTGATTTCCGAGTCGAAGAAGCCTGTTTTGTATGTGGGTGGTGGGTGTTCGCAATCAAGTGAGGAGCTGAGACGCTTTGTGGAGCT
TACGGGTATTCCTGTGGCGAGTACTTTGATGGGTCTTGGAGCTTTTCCAAGTGGGGATGAGCTTTCTCTTCAAATGTTGGGTATGCATGG
GACTGTGTATGCTAATTATGCGGTGGATAGTAGTGATTTGTTGCTTGCATTTGGGGTGAGGTTTGATGATCGAGTTACTGGTAAATTGGA
AGCTTTTGCTAGCCGAGCTAAGATTGTCCATATTGATATTGATTCGGCTGAGATTGGAAAGAACAAGCAACCTCATGTTTCCATCTGTGC
AGATATCAAGTTGGCATTACAGGGTTTGAATTCCATATTCGAGAGTAAAAAAGGTAAGCTGAAGTTGGACTTTTCTGCTTGGAGGCAGGA
GTTAACGGAGCAGAAGGTGAAGTACCCATTGAATTTTAAGACTTTCGGTGAAGCCATCCCTCCCCAATATGCTATTCAGGTTCTTGATGA
GTTAACTAACGGAAATGCCATCATTAGTACTGGTGTGGGGCAACACCAAATGTGGGCTGCCCAACACTACAAGTACAAAAAGCCACGCCA
ATGGCTTACATCTGGTGGATTAGGAGCAATGGGATTTGGTTTGCCTGCTGCTATAGGTGCGGCTGTTGGAAGACCGGGTGAGATTGTGGT
TGATATTGATGGTGATGGGAGTTTTATCATGAATGTGCAGGAGTTGGCAACAATTAAGGTGGAGAATCTCCCAGTTAAGATTATGTTGCT
GAATAATCAACACTTGGGAATGGTGGTTCAGTGGGAGGATCGATTCTATAAGGCTAACAGAGCACACACTTACTTGGGTAATCCTGCTAA
TGAGGAAGAGATCTTCCCTAATATGCTGAAATTTGCAGAGGCTTGTGGCGTACCTGCTGCAAGAGTGTCACACAGGGATGATCTTAGAGC
TGCCATTCAAAAGATGTTAGACACTCCTGGGCCATACTTGTTGGATGTGATTGTACCTCATCAGGAGCATGTTCTACCGATGATTCCCAG
TGGCGGTGCTTTCAAAGATGTGATTACGGAGGGTGATGGGAGACGTTCCTATTGACTTTGAGAAGCTACATAACTAGTTCAAGGCATTGT
ATTATCTAAAATAAACTTAATATTTATGTTTACTTAAAAGTTTTTCATTGTGTGAAGGAAAAAAAAAAAAAAAAAAAAAAAATTTCTTGT
TCTATTGGCAGCACCAATTAAGTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAANNNNA
AGGGGGGGGGGGGGGCGCCCCCCCCTCCCCC

[Blast] [AA Translation]

Associated Loci (0)

None

Genomic locations (0)

None

Library representation (21)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Solanum lycopersicum	FA	Fruit Mixture of Immature green, mature green, breaker, turning, and red ripe stages	13933	3
Solanum lycopersicum	FB	Fruit Mixture of Immature green, mature green, breaker, turning, and red ripe stages	6270	2
Solanum lycopersicum	LA	Leaf Mature leaves	6589	3
Solanum lycopersicum	LC	Leaf Mature leaves	5712	2
Solanum lycopersicum	TUS	Rearrayed collection of L. esculentum cDNA clones	37722	4
Solanum lycopersicum	cLEC	combined undifferentiated and shooting callus 7-10 days post germination	14114	2
Solanum lycopersicum	cLED	ovary 5 days pre-anthesis to 5 days post-anthesis	9878	1
Solanum lycopersicum	cLEF	fruit pericarp mature green	5317	3
Solanum lycopersicum	cLEG	fruit pericarp breaker fruit	15207	2
Solanum lycopersicum	cLEI	whole seedlings germinating seed	3927	2
Solanum lycopersicum	cLEL	developing flower buds and flowers anthesis-stage flowers from full grown plants, 4-8 weeks old	11276	7
Solanum lycopersicum	cLEN	fruit pericarp red ripe to over-ripe	3979	3
Solanum lycopersicum	cLER	leaf 4 weeks	5127	1
Solanum lycopersicum	cLEZ	root germinating seedlings	2373	1
Solanum lycopersicum	cTOA	developing flower buds and flowers 0-3mm flower buds from full grown plants	6259	3
Solanum lycopersicum	cTOC	developing flower buds and flowers 8mm to pre-anthesis flower buds from full grown plants	5759	1
Solanum lycopersicum	cTOD	flowers anthesis-stage flowers from full grown plants	5642	2
Solanum lycopersicum	cTOF	shoot developing shoots from 4-6wks old plants	9122	1
Solanum lycopersicum	cTSB	seed	1880	3
Solanum lycopersicum	cTSD	seed	1504	1
Solanum habrochaites	cLHT	leaf trichomes 4-8 weeks old	2457	1

mRNA member sequences (48)

Alignment image suppressed for unigene with 48 aligned sequences.
[Show Image]

Markers Information (0)

Expression Data (4)

Annotations (manual: 1 | blast: 2 | go: 6 )

Protein prediction analysis (2)

Gene Family (3)

Family Build (I value*)	Family ID	Annotation**	# Members
1.1	101864	Thiamine pyrophosphate enzyme N-terminal TPP binding region - Molecular Function: thiamin pyrophosphate binding (GO:0030976) Thiamine pyrophosphate enzyme central region Thiamine pyrophosphate enzyme C-terminal TPP-binding - Molecular Function: catalytic activity (GO:0003824) - Molecular Function: thiamin pyrophosphate binding (GO:0030976)	32
2	120452	Acetolactate synthase large subunit biosynthetic Thiamine pyrophosphate enzyme N-terminal TPP binding region - Molecular Function: thiamin pyrophosphate binding (GO:0030976) Thiamine pyrophosphate enzyme central region TPP-binding enzymes Thiamine pyrophosphate enzyme C-terminal TPP-binding - Molecular Function: catalytic activity (GO:0003824) - Molecular Function: thiamin pyrophosphate binding (GO:0030976)	9
5	130739	Acetolactate synthase large subunit biosynthetic Thiamine pyrophosphate enzyme N-terminal TPP binding region - Molecular Function: thiamin pyrophosphate binding (GO:0030976) Thiamine pyrophosphate enzyme central region TPP-binding enzymes Thiamine pyrophosphate enzyme C-terminal TPP-binding - Molecular Function: catalytic activity (GO:0003824) - Molecular Function: thiamin pyrophosphate binding (GO:0030976)	9

Preceding Unigenes (2)

Unigene	Build
SGN-U213768	Lycopersicon Combined #3
SGN-U213769	Lycopersicon Combined #3

Accessions	Seedlots
Accessions		Breeding Program	Seedlot Name	Contents	Seedlot Location	Count	Weight(g)

Attribute	Value
Project Name:
Start Date:
End Date:
Event Type:
Event Description:
Event Web URL: