Sol Genomics Network

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This unigene is from an out-of-date build, Tomato 200607 #1
It has been superseded by SGN-U567805 in the current build, Tomato 200607 #2

Unigene SGN-U313763

Unigene Basic Information

Unigene ID:	SGN-U313763
Unigene Build:	Tomato 200607 #1
Date:	2006-07-27
Organism:	S.lycopersicum S.habrochaites S.pennellii S.pimpinellifolium S.peruvianum S.cheesmaniae S.lycopersicoides
Alternative ID:	313763
mRNA sequence:	Length: 999 bp

>SGN-U313763 Tomato 200607 #1 (36 members)
CACCCAAAATTTCACGGATACAAGCAAACTAAATAAATAAATAAATAAACAAACCCCTATAAAAAACCCCAAATCTATTAAATCAAAGGT
ACATATCAATCGAAAAAATGAACAAGCTAAGCAGTAGTACTCCCATTTTGCTAGCTCTGGTTCTCTGCATTAGCCTAACCTCTGTTACCA
ACGCGCAACAATGCGGAAGGCAAAGGGGCGGAGCATTATGTGGTGGCAACTTGTGTTGCAGTCAATTCGGGTGGTGTGGATCGACGCCCG
AATATTGTTCACCTAGCCAAGGTTGCCAGAGCCAATGCAGAGGTGGACCAACTCCAACTCCGACTCCAGGTGGTGGTGCACAAGTTCGAG
CAACGTATCATATATATAACCCGCAGAATGTTGGGTGGGATTTGAATGCTGTTAGCGCTTACTGTTCAACTTGGGATGCTAATAAGCCTT
ACTCATGGCGGAGTAAGTATGGCTGGACTGCTTTTTGTGGTCCTGTTGGACCACGTGGTAGAGACTCCTGCGGAAAGTGCTTAAGGGTGA
CAAATACACGTACAGGAGCTCAAACAACGGTCAGAATCGTGGATCAATGCAGCAATGGCGGACTAGATTTGGACATTAACGTTTTTCGAC
AAATCGATACAGATGGAGTGGGAAATCAACAAGGACACCTTATTGTGAACTACCAATTTGTTAATTGCGGTGACAATGTGAATGTTCCTC
TGCTATCTGTTGTTGACAGAGAATGAGAAACAACTACATATACGGCTCTGTTTGTTCTGATGATTGTATTATTAGGTATAAAAGTCGTCT
TTATTTGATGATTTTAATAAGAATAAAAGAAAAAAATGAAAAAGAAAATTTCATATGATCTTTTGATCATGAATGTCTTCATTTAAGAAA
AAATGAGTTGAAGTGTGTATTGTATTTCTGATCATTTTGTACTCAACTATTATGAATTTTAAAAAAAAAAATTCGAACAAAAAAAAAAAA
AAAAAAAAA

[Blast] [AA Translation]

Associated Loci (1)

Locus symbol	Locus name	Gene activity
pi1	pathogen-induced protein

Genomic locations (0)

None

Library representation (10)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Solanum lycopersicum	FC	Fruit Mixture of mature green, light green, breaker, turning, light red, and red ripe stages	8046	2
Solanum lycopersicum	TUS	Rearrayed collection of L. esculentum cDNA clones	37722	6
Solanum lycopersicum	cLEC	combined undifferentiated and shooting callus 7-10 days post germination	14114	6
Solanum lycopersicum	cLEG	fruit pericarp breaker fruit	15207	3
Solanum lycopersicum	cLER	leaf 4 weeks	5127	2
Solanum lycopersicum	cLET	leaf 4-6 weeks	9135	4
Solanum lycopersicum	cLEX	root fruit-set stage/post-fruit loading	3142	2
Solanum lycopersicum	cTOF	shoot developing shoots from 4-6wks old plants	9122	1
Solanum lycopersicum	cTOS	suspension cultures	8026	8
Solanum lycopersicum	vSlycmRNA		8362	2

mRNA member sequences (36)

Alignment image suppressed for unigene with 36 aligned sequences.
[Show Image]

Markers Information (0)

Expression Data (6)

Annotations (manual: 2 | blast: 2 | go: 0 )

Protein prediction analysis (2)

Gene Family (3)

Family Build (I value*)	Family ID	Annotation**	# Members
1.1	101487	Glycoside hydrolase family 19 - Molecular Function: chitinase activity (GO:0004568) - Biological Process: chitin catabolism (GO:0006032) - Biological Process: response to pest pathogen or parasite (GO:0009613) - Biological Process: cell wall catabolism (GO:0016998)	104
2	119719	Barwin Barwin-related endoglucanase Chitin-binding type 1 - Molecular Function: chitin binding (GO:0008061)	13
5	130166	Barwin Barwin-related endoglucanase Chitin-binding type 1 - Molecular Function: chitin binding (GO:0008061)	12

Preceding Unigenes (1)

Unigene	Build
SGN-U214651	Lycopersicon Combined #3

Accessions	Seedlots
Accessions		Breeding Program	Seedlot Name	Contents	Seedlot Location	Count	Weight(g)

Attribute	Value
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