Sol Genomics Network

This unigene is from an out-of-date build, Tomato 200607 #1
It has been split into SGN-U573795, SGN-U588218, and SGN-U588219 in the current build, Tomato 200607 #2

Unigene SGN-U314101

Unigene Basic Information

Unigene ID:	SGN-U314101
Unigene Build:	Tomato 200607 #1
Date:	2006-07-27
Organism:	S.lycopersicum S.habrochaites S.pennellii S.pimpinellifolium S.peruvianum S.cheesmaniae S.lycopersicoides
Alternative ID:	314101
mRNA sequence:	Length: 3255 bp

>SGN-U314101 Tomato 200607 #1 (54 members)
TAACTTTTCCGGCAAAACACTCTCCTATCCGCTGAAACTTTGTCGTTTTTCTTCCTTCTTCAATAACGTTGAGATAACAGAATAGTACAT
TTGGTTCACCGGTATGTCTACCGTGACGTCATTTTCCGGCGTACAGTTTTGCGTTCCTTCTTCTTCTTCCAATTCTTCAAACAGAGTTGC
TTTATTTTCATCCCATTCAGCGCCGTACCTGAACTTCTCAGGCAAATCGCGAGTTCTTGGCAAGTGTAGTTCGTTGAAACTGAAGAGGAA
GGATGTGTTCTTCAGTAGGAAAACTGAGAAACTTTCTCAGGGCTCAAGGCTTACCGTACGTTGTGATGCTTCAAATGGAAGGATCACTCA
GCAAGATTTTACAGAAATGGCATGGCAAGCAATTGTTGCATCGCCAGAAATAGCTAAAGAGAACAAGCATCAAATAGTAGAGACTGAGCA
CTTGATGAAGGCACTGTTGGAGCAAAAGAATGGGCTGGCTCGTCGCATATTCTCCAAGACGGGTGTAGATAATACCCGCCTTTTAGAGGC
TACTGATAAGTTTATTAGACAACAACCAAAGGTTATTGGTGAGACAGCAGGTTCTATGTTAGGCCGAGAGTTGGAAGGTCTGATGCAGAG
AGCCAGGGAGTACAAGAAAGAGTATGGTGATTCCTTTGTGTCAGTTGAGCATTTGGTGCTTGGCTTCATTCAAGATAAACGATTTGGGAA
GCAACTGTTTAATGATTTCCAGATTTCCCTGAAGACACTGAAAACTGCCATTGAATCCATAAGGGGACGCCAAAATGTTATTGATCAAGA
TCCTGAAGGGAAGTATGAATCACTAGAAAAATATGGAAAAGACCTGACTGCTATGGCTAGAGCGGGGAAGCTTGACCCAGTTATAGGAAG
AGATGATGAGATACGTAGATGCATACAAATCCTCTCAAGGAGAACAAAGAATAACCCAGTGTTAATTGGTGAGCCTGGAGTTGGGAAAAC
TGCAATCTCTGAAGGGCTTGCTCAGAGAATTGTGCAAGGAGATGTACCTCAGGCTTTGATGAATCGAAGGTTGATATCTCTTGATATGGG
TGCGCTCATAGCTGGTGCAAAATATCGTGGTGAATTTGAAGACAGATTGAAGGCAGTGCTTAAGGAAGTGACAGAATCTGAAGGACAGAT
CATCCTTTTTATTGATGAGATACATACTGTTGTTGGTGCAGGTGCTACTAATGGTGCAATGGATGCTGGGAATCTATTGAAGCCGATGCT
TGGTCGAGGAGAACTACGATGTATTGGTGCGACCACCTTGGATGAATACCGTAAATATATTGAGAAAGATCCTGCCCTGGAGCGTCGTTT
CCAGCAAGTTTATGTTGACCAGCCTACAGTTGAAGACACTGTCTCCATACTTCGCGGATTACGTGAAAGATATGAGCTGCATCACGGGGT
TCGCATTTCAGACACTGCGCTTGTCGACGCAGCTATTCTTTCGGACCGTTATATTAGTGGACGTTTTCTACCTGACAAAGCTATTGACCT
AGTTGATGAAGCTGCTGCAAAACTGAAAATGGAGATCACCTCAAAACCTACAGCCCTTGACGAGATCAATCGTGCAGTTTTGAAGTTGGA
GATGGAGAGGCTATCTCTAACTAATGATACAGATAAAGCATCGAAAGACCGGTTAAACCGTCTTGAGACTGAATTGTCTCTTCTGAAGGA
GAGGCAAGCTGAGCTGACTGAGCAGTGGGAGCATGAAAAGAGTGTGATGACTCGCTTGCAGTCCATTAAGGAAGAGATCGACCGGGTAAA
TCTTGAGATCCAGCAAGCAGAGCGGGAATATGATCTTAATCGTGCTGCTGAACTTAAGTATGGGAGTCTAAACACCTTGCAGCGTCAACT
TGAAGCTTCAGAAAAAGAACTGAGTGATTATATGAAGTCTGGAAAATCGATGCTCAGAGAAGAAGTAACTGGGAATGATGTTGCAGAGAT
TGTTAGTAAGTGGACTGGGATTCCTGTTTCTAAGCTACAACAGTCGGAGAGGGAAAAGCTGTTGCATTTAGAGGAAGAGTTGCACAAACG
TGTTGTTGGTCAAGATCCAGCAGTAAGAGCAGTAGCAGAGGCAATCCAGCGCTCGCGTGCTGGACTTTCAGATCCTCATCGTCCTATTGC
AAGCTTTATGTTCATGGGTCCCACTGGAGTTGGAAAGACGGAGTTAGCTAAGGCCCTTGCTAACTATTTGTTCAATACTGAAGAGGCACT
TGTGCGCATCGATATGAGTGAATACATGGAGAAGCATGCAGTTTCAAGATTGATAGGAGCTCCCCCTGGTTATGTCGGGTATGAAGAAGG
GGGGCAGTTGACAGAGATTGTTCGCCGAAGACCTTATGCAGTTATATTGTTTGATGAAATTGAGAAGGCCCATTCGGATGTATTTAATGT
GTTCCTGCAAATCTTAGATGATGGTAGGGTGACCGACTCGCAAGGACGCACAGTGAGTTTCACCAATACTGTCATCATCATGACATCAAA
TGTTGGTTCACAATATATCCTAAATACAGATGATAATGATGATGATTCATCGAAGGAAGCGACTTATCAAACAATAAAGCAAAGGGTGAT
GGATGCTGCACGTGCAGTTTTCCGCCCTGAGTTCATGAACCGGGTTGATGAATATATAGTATTCCAGCCTCTTGATCGTGACCAGATCAG
TAGCATTGTGCGATTACAGCTTGAAAGAGTGCAGCAGAGATTAGCTGATCGTAAAATGAAGATTCAAGTGAGTGAAGCTGCTATTCAATT
GCTTGGAAGTCTTGGTTATGACCCCAACTATGGAGCACGGCCAGTGAAGCGGGTGATCCAGCAGAATGTTGAGAACGAATTGGCCAAAGG
AATATTAAGAGGAGAATTCAAGGATGAGGATACTATTTTAGTAGACACGGAGGTCAGCGCATTTTCGAATGGACAACTTCCTCAGCAGAA
GCTAGTGTTTAAAAGACAAGAGTCTGGTTCAGATTCTCCAGCTGAGAACCAAGAAGCTTTCTCTCAGAAACTATGAGACTACACCTCAAC
ATCTTGTTTAGACACATACTATGATTTCGAGCATCGAACTAGTAGTAGCTCTTGTATCTAGATTATGGATATACATATTTCACGGCTTTG
AATAGCAAATACCTACACAGTTGAACAGTGTGGAGTTCTGTTTTCGTATAATAAATAGCTTATTAGTCTATAGAAAAAAAAAAAAAAAAA
AAAACCTGCAGCCCG

[Blast] [AA Translation]

Associated Loci (1)

Locus symbol	Locus name	Gene activity
hsp110	LeHSP110/ClpB heat shock protein

Genomic locations (0)

None

Library representation (15)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Solanum lycopersicum	FA	Fruit Mixture of Immature green, mature green, breaker, turning, and red ripe stages	13933	6
Solanum lycopersicum	FC	Fruit Mixture of mature green, light green, breaker, turning, light red, and red ripe stages	8046	1
Solanum lycopersicum	LC	Leaf Mature leaves	5712	6
Solanum lycopersicum	TUS	Rearrayed collection of L. esculentum cDNA clones	37722	5
Solanum lycopersicum	cLEC	combined undifferentiated and shooting callus 7-10 days post germination	14114	1
Solanum lycopersicum	cLED	ovary 5 days pre-anthesis to 5 days post-anthesis	9878	3
Solanum lycopersicum	cLEF	fruit pericarp mature green	5317	2
Solanum lycopersicum	cLEG	fruit pericarp breaker fruit	15207	20
Solanum lycopersicum	cLER	leaf 4 weeks	5127	1
Solanum lycopersicum	cLET	leaf 4-6 weeks	9135	1
Solanum lycopersicum	cLEY	root pre-anthesis/pre-fruit loading	3259	1
Solanum lycopersicum	cTOB	developing flower buds and flowers 3-8mm flower buds from full grown plants	5524	1
Solanum lycopersicum	cTOD	flowers anthesis-stage flowers from full grown plants	5642	1
Solanum lycopersicum	vSlycmRNA		8362	1
Solanum habrochaites	cLHT	leaf trichomes 4-8 weeks old	2457	4

mRNA member sequences (54)

Alignment image suppressed for unigene with 54 aligned sequences.
[Show Image]

Markers Information (0)

Expression Data (3)

Annotations (manual: 1 | blast: 2 | go: 6 )

Protein prediction analysis (2)

Prediction based on ESTScan [ Show ESTScan Detail]

>SGN-P116914 (1038 Aa)

NFSGKTLSYPLKLCRFSSFFNNVEKQNSTFGSPDVYRDVIFRRTVLVPSSSSNSSNRVALFSSHSAPYLNFSGKSRVLGKCSSLKLKRKD
VFFSRKTEKLSQGSRLTVRCDASNGRITQQDFTEMAWQAIVASPEIAKENKHQIVETEHLMKALLEQKNGLARRIFSKTGVDNTRLLEAT
DKFIRQQPKVIGETAGSMLGRELEGLMQRAREYKKEYGDSFVSVEHLVLGFIQDKRFGKQLFNDFQISLKTLKTAIESIRGRQNVIDQDP
EGKYESLEKYGKDLTAMARAGKLDPVIGRDDEIRRCIQILSRRTKNNPVLIGEPGVGKTAISEGLAQRIVQGDVPQALMNRRLISLDMGA
LIAGAKYRGEFEDRLKAVLKEVTESEGQIILFIDEIHTVVGAGATNGAMDAGNLLKPMLGRGELRCIGATTLDEYRKYIEKDPALERRFQ
QVYVDQPTVEDTVSILRGLRERYELHHGVRISDTALVDAAILSDRYISGRFLPDKAIDLVDEAAAKLKMEITSKPTALDEINRAVLKLEM
ERLSLTNDTDKASKDRLNRLETELSLLKERQAELTEQWEHEKSVMTRLQSIKEEIDRVNLEIQQAEREYDLNRAAELKYGSLNTLQRQLE
ASEKELSDYMKSGKSMLREEVTGNDVAEIVSKWTGIPVSKLQQSEREKLLHLEEELHKRVVGQDPAVRAVAEAIQRSRAGLSDPHRPIAS
FMFMGPTGVGKTELAKALANYLFNTEEALVRIDMSEYMEKHAVSRLIGAPPGYVGYEEGGQLTEIVRRRPYAVILFDEIEKAHSDVFNVF
LQILDDGRVTDSQGRTVSFTNTVIIMTSNVGSQYILNTDDNDDDSSKEATYQTIKQRVMDAARAVFRPEFMNRVDEYIVFQPLDRDQISS
IVRLQLERVQQRLADRKMKIQVSEAAIQLLGSLGYDPNYGARPVKRVIQQNVENELAKGILRGEFKDEDTILVDTEVSAFSNGQLPQQKL
VFKRQESGSDSPAENQEAFFRNYETTPQHLXLDTYYDFEHRTSSSSCI

SignalP predicts non-secretion with a score of 0.107

IPR013093 ATPase AAA-2
IPR003959 AAA ATPase, central region
IPR003593 AAA ATPase
IPR001093 IMP dehydrogenase/GMP reductase
IPR001270 Chaperonin clpA/B
IPR004176 Clp, N terminal

Prediction based on longest six frame method

>SGN-P243287 (986 Aa)

YIWFTGMSTVTSFSGVQFCVPSSSSNSSNRVALFSSHSAPYLNFSGKSRVLGKCSSLKLKRKDVFFSRKTEKLSQGSRLTVRCDASNGRI
TQQDFTEMAWQAIVASPEIAKENKHQIVETEHLMKALLEQKNGLARRIFSKTGVDNTRLLEATDKFIRQQPKVIGETAGSMLGRELEGLM
QRAREYKKEYGDSFVSVEHLVLGFIQDKRFGKQLFNDFQISLKTLKTAIESIRGRQNVIDQDPEGKYESLEKYGKDLTAMARAGKLDPVI
GRDDEIRRCIQILSRRTKNNPVLIGEPGVGKTAISEGLAQRIVQGDVPQALMNRRLISLDMGALIAGAKYRGEFEDRLKAVLKEVTESEG
QIILFIDEIHTVVGAGATNGAMDAGNLLKPMLGRGELRCIGATTLDEYRKYIEKDPALERRFQQVYVDQPTVEDTVSILRGLRERYELHH
GVRISDTALVDAAILSDRYISGRFLPDKAIDLVDEAAAKLKMEITSKPTALDEINRAVLKLEMERLSLTNDTDKASKDRLNRLETELSLL
KERQAELTEQWEHEKSVMTRLQSIKEEIDRVNLEIQQAEREYDLNRAAELKYGSLNTLQRQLEASEKELSDYMKSGKSMLREEVTGNDVA
EIVSKWTGIPVSKLQQSEREKLLHLEEELHKRVVGQDPAVRAVAEAIQRSRAGLSDPHRPIASFMFMGPTGVGKTELAKALANYLFNTEE
ALVRIDMSEYMEKHAVSRLIGAPPGYVGYEEGGQLTEIVRRRPYAVILFDEIEKAHSDVFNVFLQILDDGRVTDSQGRTVSFTNTVIIMT
SNVGSQYILNTDDNDDDSSKEATYQTIKQRVMDAARAVFRPEFMNRVDEYIVFQPLDRDQISSIVRLQLERVQQRLADRKMKIQVSEAAI
QLLGSLGYDPNYGARPVKRVIQQNVENELAKGILRGEFKDEDTILVDTEVSAFSNGQLPQQKLVFKRQESGSDSPAENQEAFSQKL

SignalP predicts non-secretion with a score of 0.286

No InterPro domain matches or not analyzed.

Gene Family (3)

Family Build (I value*)	Family ID	Annotation**	# Members
1.1	101566	Clp N terminal - Molecular Function: protein binding (GO:0005515) - Molecular Function: ATP binding (GO:0005524) - Biological Process: protein metabolism (GO:0019538)	72
2	118715	Clp N terminal - Molecular Function: protein binding (GO:0005515) - Molecular Function: ATP binding (GO:0005524) - Biological Process: protein metabolism (GO:0019538)	34
5	129182	Clp N terminal - Molecular Function: protein binding (GO:0005515) - Molecular Function: ATP binding (GO:0005524) - Biological Process: protein metabolism (GO:0019538)	33

Preceding Unigenes (3)

Unigene	Build
SGN-U214776	Lycopersicon Combined #3
SGN-U220044	Lycopersicon Combined #3
SGN-U240501	Lycopersicon Combined #3

Accessions	Seedlots
Accessions		Breeding Program	Seedlot Name	Contents	Seedlot Location	Count	Weight(g)

Attribute	Value
Project Name:
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Event Web URL: