Sol Genomics Network

This unigene is from an out-of-date build, Tomato 200607 #1
It has been superseded by SGN-U575182 in the current build, Tomato 200607 #2

Unigene SGN-U314197

Unigene Basic Information

Unigene ID:	SGN-U314197
Unigene Build:	Tomato 200607 #1
Date:	2006-07-27
Organism:	S.lycopersicum S.habrochaites S.pennellii S.pimpinellifolium S.peruvianum S.cheesmaniae S.lycopersicoides
Alternative ID:	314197
mRNA sequence:	Length: 879 bp

>SGN-U314197 Tomato 200607 #1 (33 members)
GGCGATTGGCGGCCAATCGGCCGAATTGCTCTTTTTTTTTTCTGAAAAGAAAAATTTGAAACTCTCTTGAGATATTTCTAGGGTTTCATT
TCATCGTTGAAATTAGGGTTAGGGTATCCATCCATCCATCAAGTAATCAATCATGCCGAAGAATAAGGGAAAGGGAGGAAAGAACAGGAA
GAGAGGGAAGAACGAAGCTGATGATGAAAAGAGAGAGCTTGTTTTTAAGGAAGATGGACAGGAATATGCTCAAGTTCTTCGTATGCTTGG
AAATGGCCGATGTGAAGCTATGTGTATTGATGGGACGAAACGTCTATGTCACATACGTGGTAAGATGCATAAGAAAGTTTGGATTGCCGC
CGGTGATATCATCCTTGTCGGACTCCGTGATTATCAGGATGACAAGGCTGATGTTATTCTGAAGTATATGCCAGATGAGGCAAGGTTGTT
GAAGGCATACGGAGAGTTACCAGAGAACACTAGGCTCAATGAGGGTATTGCTAATTTGGATGAAGAAGATGAGAATGCCGCTGATGATTA
CATTGAGTTTGAAGATGAAGACATTGACAAAATCTAAAATTCCTTATCTAAACAGTGCTATCACTGGGGTTTCCTGTTGGCCTCACAAAT
ATTTCCTTGGAGCTTGAGTTCAATACAAAAAGAAAGAGAGACCTTATATGTACCATCTTAATATGATTGAACTTTGTGCACTAGTACTTC
TGTATGAAGATTTATGCTTTGGTGAATTAGATACAATAATAGCCACCTGTTCTCTATTCTACTCATGCAACTCTTGATTTATTAGATGCA
ATAATAATGTGTTGATAAATGAAAAAGAAAAAAAAAAAAACCTTCTGAGTTAAAAAAAAAAAAAAAAAA

[Blast] [AA Translation]

Associated Loci (0)

None

Genomic locations (0)

None

Library representation (14)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Solanum lycopersicum	FB	Fruit Mixture of Immature green, mature green, breaker, turning, and red ripe stages	6270	5
Solanum lycopersicum	FC	Fruit Mixture of mature green, light green, breaker, turning, light red, and red ripe stages	8046	6
Solanum lycopersicum	LB	Leaf Mature leaves	3316	1
Solanum lycopersicum	TUS	Rearrayed collection of L. esculentum cDNA clones	37722	3
Solanum lycopersicum	cLEC	combined undifferentiated and shooting callus 7-10 days post germination	14114	1
Solanum lycopersicum	cLED	ovary 5 days pre-anthesis to 5 days post-anthesis	9878	1
Solanum lycopersicum	cLEF	fruit pericarp mature green	5317	2
Solanum lycopersicum	cLEG	fruit pericarp breaker fruit	15207	4
Solanum lycopersicum	cLEN	fruit pericarp red ripe to over-ripe	3979	2
Solanum lycopersicum	cLET	leaf 4-6 weeks	9135	3
Solanum lycopersicum	cLEX	root fruit-set stage/post-fruit loading	3142	1
Solanum lycopersicum	cTOF	shoot developing shoots from 4-6wks old plants	9122	2
Solanum lycopersicum	cTOS	suspension cultures	8026	1
Solanum habrochaites	LH_Ea	Glandular Trichomes	3840	1

mRNA member sequences (33)

Alignment image suppressed for unigene with 33 aligned sequences.
[Show Image]

Markers Information (0)

Expression Data (3)

Annotations (manual: 0 | blast: 2 | go: 3 )

Protein prediction analysis (2)

Gene Family (3)

Family Build (I value*)	Family ID	Annotation**	# Members
1.1	102678	Nucleic acid-binding OB-fold subgroup S1 IF1 type - Molecular Function: RNA binding (GO:0003723) - Molecular Function: translation initiation factor activity (GO:0003743) - Biological Process: translational initiation (GO:0006413) Nucleic acid-binding OB-fold - Molecular Function: nucleic acid binding (GO:0003676) Eukaryotic initiation factor 1A (eIF-1A) - Molecular Function: translation initiation factor activity (GO:0003743) - Biological Process: translational initiation (GO:0006413)	11
2	121031	Eukaryotic initiation factor 1A (eIF-1A) - Molecular Function: translation initiation factor activity (GO:0003743) - Biological Process: translational initiation (GO:0006413) S1 IF1 type - Molecular Function: RNA binding (GO:0003723) - Molecular Function: translation initiation factor activity (GO:0003743) - Biological Process: translational initiation (GO:0006413) Nucleic acid-binding OB-fold - Molecular Function: nucleic acid binding (GO:0003676) Nucleic acid-binding OB-fold subgroup	7
5	131277	Eukaryotic initiation factor 1A (eIF-1A) - Molecular Function: translation initiation factor activity (GO:0003743) - Biological Process: translational initiation (GO:0006413) S1 IF1 type - Molecular Function: RNA binding (GO:0003723) - Molecular Function: translation initiation factor activity (GO:0003743) - Biological Process: translational initiation (GO:0006413) Nucleic acid-binding OB-fold - Molecular Function: nucleic acid binding (GO:0003676) Nucleic acid-binding OB-fold subgroup	7

Preceding Unigenes (1)

Unigene	Build
SGN-U214495	Lycopersicon Combined #3

Accessions	Seedlots
Accessions		Breeding Program	Seedlot Name	Contents	Seedlot Location	Count	Weight(g)

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