Sol Genomics Network

Notice: Load is currently high due to bots. Some functionality has been turned off.

This unigene is from an out-of-date build, Tomato 200607 #1
It has been superseded by SGN-U581531 in the current build, Tomato 200607 #2

Unigene SGN-U315243

Unigene Basic Information

Unigene ID:	SGN-U315243
Unigene Build:	Tomato 200607 #1
Date:	2006-07-27
Organism:	S.lycopersicum S.habrochaites S.pennellii S.pimpinellifolium S.peruvianum S.cheesmaniae S.lycopersicoides
Alternative ID:	315243
mRNA sequence:	Length: 2897 bp

>SGN-U315243 Tomato 200607 #1 (44 members)
CTTTCTTTGTTCTCTCTTTAACCTCAATCTTTCTTTCTCTCTCTATTTTTTGCCCTACTCTGTTGGGGTTCTTTAAAAATCTGTATTTTT
GAGGGTTCTTGAAAAAAAATTGGATTTTTTCATCTGGAATGCGAATCTTGGTTAAGGATATAATCTGGGTTGTGTTTTTCTTGGTTCAAA
ATCTGATCTTTTTTGCTTTACAGTTTGGGATTGAAGAACAATCATGCCTACTCTTGTTAATTACAGTGGTGATGATGAGTTCTACTCTGG
TGGATCGTTTTGTTCTGCAGATTTGGGTCTCATGTTGTCTTTGGGTCATGCTGATGTTTACTGTCCTCCTAGGAAGAGGGCAAGAATTAG
TGGCCCGTTTGTTGTCGAAGACCGATCAAAGGATCCATCTCTTGAGGTTCTTCCTGATGAATGCCTATTTGAGATCCTCAGACGATTGCC
TGGAGGCCGAGAAAGGGGTGCAGCAGCTTGTGTTTCTAAGCGCTGGCTTACAGTGTTGAGTAGCGTGAAAAACTCTGAAATTTGCAGGAG
CAAGAGCTATAACAATCTAAATGACGCTATAATGATCTCTAAAGATGAAGATCTTGAAGTTGAATGTGATGGATACCTTACCAGGTGTGT
GGAAGGGAAGAAAGCTACTGATATTAGACTTGCTGCAATTGCAGTTGGGACGTCTACCCGTGGTGGACTAGGAAAGCTTTCTATTCGAGG
GAGTAACTCAGTTCGTGGTATTACTAATGTCGGTCTATCTGCTGTTGCACATGGGTGTCCTTCTCTTAGGGTCCTATCATTGTGGAATGT
TCCTTCTATCGGAGATGAAGGTCTCTTGGAGGTTGCAAGAGAATGCCATTCATTAGAAAAGCTAGATCTGAGCCACTGTCGTTCAATCTC
CAACAAGGGTCTTGTTGCAATAGCAGAGAATTGCCCTAGCTTGACTTCATTGACTATTGAATCCTGTCCAAATATTGGAAACGAAGGCTT
GCAAGCTGTTGGAAAATACTGCACCAAACTACAGTCTCTTACAATTAAGGACTGCCCGCTTGTCGGAGATCAGGGAGTTGCTAGTCTTCT
GTCATCAGGTGCTTCAATGTTAACAAAAGTGAAACTACATGGTCTAAACATTACCGATTTCTCGCTTGCTGTCATTGGTCACTACGGCAA
GCTGATTACCAGTCTTAATCTTTGTTCACTTCGTAATGTGAGTCAGAAGGGATTTTGGGTCATGGGTAATGCTCAAGGCCTCCAGTCTTT
GGTTTCTTTGACAATCACCTTATGCCAGGGAGCCACTGATGTCGGTCTTGAAGCTGTGGGAAAGGGATGCCCAAATCTCAAATATATGTG
CATTCGCAAGTGTTGCTTTGTTTCTGACGGTGGTCTTGTTGCTTTCGCTAAAGAGGCTGGATCTCTCGAGAGTTTAATCTTGGAGGAGTG
CAACAGAATTACCCAAGTAGGTATCCTTAATGCAGTTTCAAACTGCAGGAAGTTAAAGTCTCTTTCCCTAGTGAAGTGCATGGGAATCAA
GGATCTAGCTCTACAAACTTCCATGCTGTCTCCATGTGAATCTCTTCGGTCCTTGTCTATCCGAAGCTGTCCAGGATTCGGGAGCAGTAG
CTTAGCTATGGTTGGTAAGCTCTGCCCCAAGCTGCATCAATTAGATCTCAGTGGGCTTTGTGGAATAACCGATGCTGGTCTTCTCCCACT
CTTGGAGAACTGTGAAGGACTTGTTAAGGTGAACCTTAGCGACTGCCTGAACTTGACAGACCAAGTGGTGCTTTCATTGGCTATGCGACA
TGGCGAGACCCTTGAATTGTTGAATCTCGACGGATGCAGGAAGGTTACCGATGCAAGTTTAGTGGCAATTGCAGATTATTGCCCATTACT
TATTGATCTTGATGTTTCTAAGAGTGCAATAACTGATTCTGGTGTAGCTGCTTTATCCCGTGGAGTGCAAGTGAATTTGCAGGTCCTTTC
CTTATCAGGTTGCTCCATGGTATCGAACAAGAGTGTCCTTTCTCTTAAAAAGTTAGGAGAGAATCTACTCGGCTTGAATCTCCAGCATTG
CTCCGTTAGTTGCAGCTCAGTCGAGCTTCTTGTGGAGGCTTTGTGGAGGTGTGACATCCTCTCCTAAACCCACAAAGGGCACAAGGAAAT
GCATTCGAAATGGTCAAAACGAATAAGCAGAAAGCTAAATTGGTTCATTCAGCCTGGCAATTACAGAAGCAAACATGAGTGTTCTTTTTT
TAGCCCGTATATATTCGTGGCTATCTAATACTTCAGTGTCTCGGTTGTTTTCCAGGACGCTATGGCATACATCTTTTTCCCACCATTTTT
TGCAGGGCTTCGTCAAATCGAAACCCTGTTTCAGCCATTTTTGGAGACTTACCTCCATCATGCCATGGTCTCCTGAGAATACAGTCACCT
AGTACTGAGATTAAAATTTTCACTCATGCTGCTCCTCGAGAGCCAGGCGGTTTGAATCATTCAGCTAAAACTGCGATAGACAAGATTCAT
CGCGCATTTGCCTCTTTTGTGCTTAGCTACATTGCAGGAATCAGACACTAGTTGTGTAGTTTTTTTTCATGTTCAAGAGTCTTTAGTGTT
TTCACTGTAAGTATTCTATTATGTGTCTTTTAGTCTTTAGTTGCTTTGAGCAAATTTCTGTTGTTGTGGTGCCTGTTATTCCCAGGGGCT
TGGCCATTACAACCTTATATAGGTTGTTTTTTTAACCAGTCCCTAGTTTTTTGATAGGATTATCAATGTCCTATTTTTTTACCAGGTTCC
ATATATTCAGATTTGTACTCCTTGCCGCTATGTTTTTTTTTTCTATATATAATGAAGTAATAGTTTGTTTGTCTTAAAAAAAAAAAAAAA
AAAACTCGAGGGGGGCC

[Blast] [AA Translation]

Associated Loci (1)

Locus symbol	Locus name	Gene activity
EBF1	EIN3-binding F-box protein 1

Genomic locations (0)

None

Library representation (15)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Solanum pennellii	cLPT	leaf trichomes 4-8 weeks old	2729	6
Solanum lycopersicum	FA	Fruit Mixture of Immature green, mature green, breaker, turning, and red ripe stages	13933	3
Solanum lycopersicum	LE12	Fruit 12 days post anthesis	276	1
Solanum lycopersicum	TUS	Rearrayed collection of L. esculentum cDNA clones	37722	10
Solanum lycopersicum	cLEC	combined undifferentiated and shooting callus 7-10 days post germination	14114	5
Solanum lycopersicum	cLEG	fruit pericarp breaker fruit	15207	4
Solanum lycopersicum	cLEI	whole seedlings germinating seed	3927	2
Solanum lycopersicum	cLER	leaf 4 weeks	5127	2
Solanum lycopersicum	cLEX	root fruit-set stage/post-fruit loading	3142	1
Solanum lycopersicum	cLEZ	root germinating seedlings	2373	1
Solanum lycopersicum	cTOD	flowers anthesis-stage flowers from full grown plants	5642	3
Solanum lycopersicum	cTOE	Crown gall crown galls from full-grown plants (4-8 wks old)	5204	2
Solanum lycopersicum	cTOF	shoot developing shoots from 4-6wks old plants	9122	2
Solanum lycopersicum	vSlycmRNA		8362	1
Solanum habrochaites	cLHT	leaf trichomes 4-8 weeks old	2457	1

mRNA member sequences (44)

Alignment image suppressed for unigene with 44 aligned sequences.
[Show Image]

Markers Information (0)

Expression Data (1)

Annotations (manual: 2 | blast: 2 | go: 1 )

Protein prediction analysis (2)

Gene Family (3)

Family Build (I value*)	Family ID	Annotation**	# Members
1.1	101429	Cyclin-like F-box	190
2	118934	Leucine-rich repeat cysteine-containing	25
5	130151	Leucine-rich repeat Leucine-rich repeat cysteine-containing Leucine-rich repeat cysteine-containing subtype Cyclin-like F-box	12

Preceding Unigenes (1)

Unigene	Build
SGN-U214287	Lycopersicon Combined #3

Accessions	Seedlots
Accessions		Breeding Program	Seedlot Name	Contents	Seedlot Location	Count	Weight(g)

Attribute	Value
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