Sol Genomics Network

This unigene is from an out-of-date build, Tomato 200607 #1
It has been superseded by SGN-U566964 in the current build, Tomato 200607 #2

Unigene SGN-U315513

Unigene Basic Information

Unigene ID:	SGN-U315513
Unigene Build:	Tomato 200607 #1
Date:	2006-07-27
Organism:	S.lycopersicum S.habrochaites S.pennellii S.pimpinellifolium S.peruvianum S.cheesmaniae S.lycopersicoides
Alternative ID:	315513
mRNA sequence:	Length: 1377 bp

>SGN-U315513 Tomato 200607 #1 (5 members)
TCCATTGGCTATTGAAGGTCCTCAACCTGCTGCCACCCAACCTGCCCATAACTTGAGTTCTGGTGTCGGCATTGCTCCAAATGCAGAGGA
TGCGCTAGCACTTGCACCTATTGAAGAACAGACTGCAACAGTTCAGCCAATAGGAAATATTGCAGAAAGGTTTCAAGCCTTGGTCCTCAA
AGACAGTGGTATACTGTATGAGGATCCTTATATTCAGATTGGCACAAAAGCAGAGTGGCGAGCACATCATGGACGGTTGGTCCTCTTCTT
GGGAAACAAGAATACGGCTCCTCTTGTTTCGGTTCAGGCTCTGATATTGCCCCCATCTCATCTGAGAATAGAACTGTCATTAGTACCCGA
GACAATTCCTCCTCGTGCACAGGTTCAATGTCCTCTTGAAGTAGTCAACCTCCGTCCAAGTAGGGATGTGGCGGTTCTTGACTTCTCATA
TAATTTTGGGGCGCAGTTGGTCAATGTTAAACTTCGACTCCCTGCCATCTTGAATAAGTTTCTTCAGCCTATTACAGTATCTGCCGAAGA
GTTTTTCCCGCAGTGGAGATCACTATCTGGGCCGCCACTGAAGCTGCAAGAAGTGGTTAGAGGTGTAAGACCAATGTCACTTCTGGAAAT
GACAAACCTGTTCAACAGTTTACGCTTGATGGTTTGTCCAGGGCTTGATCCAAATGCAAATAATTTGGTTGCTAGCACAACTTTCTACTC
CGACAGTACACGAGCCATGTTGTGTTTGGTGAGAATAGAAACAGATCCAGCTGATAGAACTCAACTGCGTATGACAGTTGCTTCTGGAGA
TCCTACTCTGACATTCGAGTTGAAGGAGTTCATTAAAGAACAATTGATTATAATCCCTACAGCTGCCACGGCTGCTGCACAACCAGTTCC
TCAGCCAACCTCTTCATCTCCACCAGTATCAGACCCTGGGGCACTGCTAGCTGGTTTGCTTTAAGTGGTTTTCAATTTGTGATGGACTTT
GTCCACAAACGACGGCTGTAAAATTTGTTTATATTGCACACCACAAGTCCCAAAGGCAAGATGGACATTGAGAAATAGGATGCCAGGGCT
GGCGGAAGAGAGGGTGAGACTTCTGATCGGCATAGCATATCATTGGATTTCTGGGACGTTAAATCGGAGTTTTGAGATTCTTTTGCACAT
ATATTTTGTGCTTTCGTGAGGTCTGTAGCCTTTAGATGTGAGGGTCTATTAATTCTTTTCTTTCTTCTCCTTTAAATTTCATATTTCCCT
TTAGTCAGGCTTTACATATTGGTTTGCCCCTATGTATTTTAGTTTCCTACTACTATATTTAGGAAAAAGAAATAGCGTGATTGAATTTCT
TGCCAAACAAAAACAAAAAAAAAAAAA

[Blast] [AA Translation]

Associated Loci (0)

None

Genomic locations (0)

None

Library representation (5)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Solanum lycopersicum	FB	Fruit Mixture of Immature green, mature green, breaker, turning, and red ripe stages	6270	1
Solanum lycopersicum	cLEC	combined undifferentiated and shooting callus 7-10 days post germination	14114	1
Solanum lycopersicum	cLEM	fruit immature green fruit	4240	1
Solanum lycopersicum	cTOA	developing flower buds and flowers 0-3mm flower buds from full grown plants	6259	1
Solanum lycopersicum	cTOF	shoot developing shoots from 4-6wks old plants	9122	1

mRNA member sequences (5)

To view details for a particular member sequence, click the SGN-E# identifier.

Markers Information (0)

Expression Data (0)

Annotations (manual: 0 | blast: 2 | go: 3 )

Protein prediction analysis (2)

Gene Family (3)

Family Build (I value*)	Family ID	Annotation**	# Members
1.1	101525	Armadillo-like helical - Molecular Function: binding (GO:0005488)	87
2	119876	Armadillo-like helical - Molecular Function: binding (GO:0005488) Adaptin N-terminal AP2 clathrin adaptin alpha chain C-terminal - Molecular Function: structural molecule activity (GO:0005198) - Cellular Component: coated pit (GO:0005905) Alpha/gamma adaptin C-terminal - Biological Process: protein complex assembly (GO:0006461) - Biological Process: intracellular protein transport (GO:0006886) - Cellular Component: clathrin coat of trans-Golgi network vesicle (GO:0030130) AP2 clathrin adaptor alpha and beta chain appendage	12
5	130336	Armadillo-like helical - Molecular Function: binding (GO:0005488) Adaptin N-terminal AP2 clathrin adaptin alpha chain C-terminal - Molecular Function: structural molecule activity (GO:0005198) - Cellular Component: coated pit (GO:0005905) Alpha/gamma adaptin C-terminal - Biological Process: protein complex assembly (GO:0006461) - Biological Process: intracellular protein transport (GO:0006886) - Cellular Component: clathrin coat of trans-Golgi network vesicle (GO:0030130) AP2 clathrin adaptor alpha and beta chain appendage	11

Preceding Unigenes (1)

Unigene	Build
SGN-U216807	Lycopersicon Combined #3

Accessions	Seedlots
Accessions		Breeding Program	Seedlot Name	Contents	Seedlot Location	Count	Weight(g)

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