Sol Genomics Network

This unigene is from an out-of-date build, Tomato 200607 #1
It has been superseded by SGN-U567281 in the current build, Tomato 200607 #2

Unigene SGN-U315816

Unigene Basic Information

Unigene ID:	SGN-U315816
Unigene Build:	Tomato 200607 #1
Date:	2006-07-27
Organism:	S.lycopersicum S.habrochaites S.pennellii S.pimpinellifolium S.peruvianum S.cheesmaniae S.lycopersicoides
Alternative ID:	315816
mRNA sequence:	Length: 2339 bp

>SGN-U315816 Tomato 200607 #1 (34 members)
AATTCGGCACGAGGCTAGAGCTTTCTGATCATTCTATTATGAATTTTTTATGTTATTGTAATGATAATAATAAATGCATGTTTTGTTTTG
TTTTTGTTTTTGTTCATCCATCTGTAGGTATTTATTTATAGATTTCGACCACACATGGCAAGCATCACAGCTTCACACTTTGTGTCAAGA
AGCTCAAATGTCCAAACTTCACTAGACACCAAATCAACCTTGTCACAGATAGGACTCAGGAACCATACTCTGACACACAATGGGTTAAGG
GCTGTTAACAAGCTTGATGGGCTCCAATCAAGAACTAATACTAAGGTAACACCCAAGATGAGATCCACCAAGTCAGCTACCATTGTTTGT
GGAAAGGGAATGAACTTGATCTTTGTGGGTACTGAGGTTGGTCCTTGGAGCAAAACTGGTGGACTAGGTGATGTTCTTGGTGGACTACCA
CCAGCCCTTGCAGCCCGCGGACATCGGGTAATGACAATATCCCCCCGTTATGACCAATACAAAGATGCTTGGGATACTAGCGTTGCCCTT
GAGGTCAAAGTTGGAGACAGCATTGAAATTGTTCGCTTCTTTCACTGCTATAAACGTGGGGTTGATCGTGTTTTTGTTGACCACCCAATG
TTCTTGGAGAAAGTTTGGGGCAAAACTGGTTCAAAAATCTACGGCCCCAAAGCTGGACTGGATTATCTGGACAATGAACTTAGGTTCAGC
TTGTTGTGTCAAGCAGCCCTAGAGGCACCTAGAGTTTTGAATTTGAACAGTAGCAACTACTTCTCAGGACCATATGGAGAGGATGTTCTC
TTCATTGCCAATGATTGGCACACAGCTCTAATTCCCTGCTACTTAAAGTCAATGTACCAGTCCAGAGGAATCTATTTGAATGCCAAGGTC
GCTTTCTGCATCCATAACATTGCCTACCAAGGCAGATTTTCTTTCTCTGACTTCCCTCTTCTCAATCTTCCTGATGAATTCAGGGGTTCT
TTTGATTTCATTGATGGATATGAGAAACCTGTTAAGGGTAGGAAAATCAACTGGATGAAGGCTGGGATATTAGAATCACATAGGGTGGTT
ACAGTAAGCCCATACTATGCCCAAGAACTTGTCTCTGCTGTTGACAAGGGTGTTGAATTGGACAGTGTCCTTCGTAAGACTTGCATAACT
GGGATTGTGAATGGCATGGATACACAAGAGTGGAACCCAGCGACTGACAAATACACAGATGTCAAATACGATATAACCACTGTCATGGAC
GCAAAACCTTTACTAAAGGAGGCTCTTCAAGCAGCAGTTGGCTTGCCTGTTGACAAGAAGATCCCCTTGATTGGCTTCATCGGCAGACTT
GAGGAGCAGAAAGGTTCAGATATTCTTGTTGCTGCAATTCACAAGTTTATCGAATTGGATGTTCAAATTGTAGTCCTTGGAACTGGCAAA
AAGGAGTTTGAGCAGGAGATTGAACAGCTCGAAGTGTTGTACCCTAATAAAGCTAAAGGAGTGGCAAAATTCAATGTCCCTTTGGCTCAC
ATGATCACTGCTGGTGCTGATTTTATGTTGGTCCCAAGCAGATTTGAACCTTGTGGTCTCATTCAGTTACATGCTATGCGATATGGAACA
GTGCCAATCTGTGCCTCAACTGGTGGACTTGTTGACACTGTGAAAGAAGGCTATACTGGATTCCATATGGGAGCCTTCAATGTTGAATGC
GATGTTGTTGACCCAGATGATGTGCTTAAGATAGTAACAACAGTGTCAAGAGCTCTTGCAGTCTATGGCACCCTTGCGTTTGCTGAGATG
ATAAAAAATTGCATGTCAGAGGAGCTCTCTTGGAAGGAACCTGCCAAGAAATGGGAGACGTTGCTATTGGGCTTAGGAGCTTCTGGCAGT
GAACCCGGTGTCGAAGGGGAAGAAATCGCTCCACTTGCCAAGGAAAATGTAGCCACTCCCTAAATGAGCTTTGGTCTTATCCTTGTTTCA
ACAATAAGGTCATTAATTATGTAGAACCCTAATATGGGGTCTCAGTCATCTATAAAATGAATGGTTTTTGCTGGGGAGCAGCAGGTTAAT
GTTTTTGTAGGGAAGGGTCAATAGAAAATAGTTATTACTAATGTTTGCGACTAAATGCTTAGTAATGTTAGCATAAATAATACTAGTAGC
TAATATGCGTGAATTTGTTTTACTTTTTCTTGCATAATTATTTGCAGTACATATATATAAATTACCCAAGGAATCAATGTTTGTGGCTCC
GTCCTTTGATGAATACAGAGCTAGTGTGGCAAGTTATAAATTTTGTTTAAAAGAAGCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

[Blast] [AA Translation]

Associated Loci (0)

None

Genomic locations (0)

None

Library representation (16)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Solanum pennellii	cLPT	leaf trichomes 4-8 weeks old	2729	1
Solanum lycopersicum	FA	Fruit Mixture of Immature green, mature green, breaker, turning, and red ripe stages	13933	3
Solanum lycopersicum	FB	Fruit Mixture of Immature green, mature green, breaker, turning, and red ripe stages	6270	1
Solanum lycopersicum	FC	Fruit Mixture of mature green, light green, breaker, turning, light red, and red ripe stages	8046	1
Solanum lycopersicum	LA	Leaf Mature leaves	6589	2
Solanum lycopersicum	LB	Leaf Mature leaves	3316	2
Solanum lycopersicum	LC	Leaf Mature leaves	5712	9
Solanum lycopersicum	TUS	Rearrayed collection of L. esculentum cDNA clones	37722	2
Solanum lycopersicum	cLEG	fruit pericarp breaker fruit	15207	2
Solanum lycopersicum	cLEL	developing flower buds and flowers anthesis-stage flowers from full grown plants, 4-8 weeks old	11276	4
Solanum lycopersicum	cLEM	fruit immature green fruit	4240	1
Solanum lycopersicum	cLER	leaf 4 weeks	5127	1
Solanum lycopersicum	cTOD	flowers anthesis-stage flowers from full grown plants	5642	1
Solanum lycopersicum	cTOF	shoot developing shoots from 4-6wks old plants	9122	1
Solanum lycopersicum	cTSC	seed	2256	2
Solanum lycopersicum	vSlycmRNA		8362	1

mRNA member sequences (34)

Alignment image suppressed for unigene with 34 aligned sequences.
[Show Image]

Markers Information (0)

Expression Data (0)

Annotations (manual: 1 | blast: 2 | go: 2 )

Protein prediction analysis (2)

Gene Family (3)

Family Build (I value*)	Family ID	Annotation**	# Members
1.1	101669	Starch synthase catalytic region	48
2	119071	Starch synthase catalytic region Glycosyl transferase group 1 - Biological Process: biosynthesis (GO:0009058) Glycogen/starch synthases ADP-glucose type - Molecular Function: starch synthase activity (GO:0009011) - Biological Process: glucan biosynthesis (GO:0009250)	21
5	130402	Starch synthase catalytic region Glycosyl transferase group 1 - Biological Process: biosynthesis (GO:0009058) Glycogen/starch synthases ADP-glucose type - Molecular Function: starch synthase activity (GO:0009011) - Biological Process: glucan biosynthesis (GO:0009250)	10

Preceding Unigenes (2)

Unigene	Build
SGN-U218165	Lycopersicon Combined #3
SGN-U223346	Lycopersicon Combined #3

Accessions	Seedlots
Accessions		Breeding Program	Seedlot Name	Contents	Seedlot Location	Count	Weight(g)

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